Factsheet for TraesCS3B01G018200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	52.86	45.38
TraesCS7B01G147600.1	Wheat	plastid	23.11	44.3
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	27.92	39.23
TraesCS7B01G030300.1	Wheat	plastid	28.38	38.51
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.38	38.15
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	26.77	37.74
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	23.57	37.32
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	57.89	37.21
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	24.94	37.2
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	23.11	36.59
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	23.8	35.49
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	26.77	35.24
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	27.0	35.01
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	25.63	34.89
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	25.86	34.56
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	25.86	34.35
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	25.63	34.25
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	25.4	33.95
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	25.17	33.64
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	25.63	33.63
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	24.94	33.33
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	24.71	33.03
TraesCS3B01G053300.1	Wheat	plastid	15.33	32.84
Os01t0122701-00	Rice	plastid	7.55	32.67
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	24.26	32.02
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	23.34	31.78
EES00397	Sorghum	plastid	23.11	31.37
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	21.05	29.87
TraesCS7B01G040200.1	Wheat	cytosol	21.05	29.11
TraesCS3B01G026900.1	Wheat	nucleus	19.68	26.88
TraesCS3B01G054000.1	Wheat	cytosol	18.99	26.52
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	18.99	26.43
TraesCS3B01G028000.1	Wheat	mitochondrion	15.1	25.0
TraesCS6B01G375600.1	Wheat	plastid	19.22	24.21
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	18.76	22.97
TraesCS3B01G116800.1	Wheat	cytosol	17.16	22.73
TraesCS3B01G572900.1	Wheat	cytosol	18.31	22.1
TraesCS7B01G197600.1	Wheat	cytosol	12.59	21.65
TraesCS3B01G573000.1	Wheat	cytosol	15.1	20.69
TraesCS6B01G375700.1	Wheat	plastid	16.25	20.06
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	21.05	18.74
TraesCS1B01G344300.1	Wheat	nucleus	30.21	15.49
TraesCS3B01G079200.1	Wheat	cytosol, plastid	18.31	13.47

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G018200	EnsemblPlants:TraesCS3B01G018200.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:7594617..7597152

Molecular Weight (calculated)

46029.9 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.152

Length

437 amino acids

Sequence
(BLAST)

001: MQFTSSICGP AKNSVRVSAR RLDESVYAPV LKRMPNGNTV EGGSRADSDT NTDGLADQFA IIDTDHNNKH RPVSAEHGNA TTTPNTASSA IVPVHVVLDT
101: SGQSAVAAPG SSTERTIFPA SGEQLQSAGP SSKPYTAQIT DGMQVTPNTT IGRNGGSPST MKKDDRSANK FNVEPPSNGQ VKRAGEVTLK MDMSLLNCRV
201: CSRPIKPPVF QCNAGHVACG RCLVELPGEQ CQTCEHGGGF SRCPTIDAVV SSLTVMCGHD GCGSDVPYNE LDDHQSACQY APCFCMEPGC GFFGAPLALL
301: SHMGALHAMP VHKVHYGKVH RFRVLEPGCL LHGQGDDSVF LLAVGAIGMA TVVSVVCIRA GVSSWPQYAV KLRANCPPPP SSIEGSILLD MKPVTSSTRP
401: GEVALMELPS FLGVPPTYLV GSGASKEVSL DVHIDRM

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.