Factsheet for TraesCS7B01G351200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	90.58	88.29
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	88.31	85.8
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	83.12	81.27
TraesCS7B01G040200.1	Wheat	cytosol	79.22	77.22
TraesCS3B01G026900.1	Wheat	nucleus	72.4	69.69
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	70.13	68.79
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	56.82	49.02
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	42.53	38.87
EES00395	Sorghum	cytosol, nucleus, plastid	41.23	37.13
TraesCS3B01G572900.1	Wheat	cytosol	43.51	37.02
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	36.69	36.33
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	42.53	35.69
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	32.79	34.47
TraesCS7B01G147600.1	Wheat	plastid	25.32	34.21
KXG32022	Sorghum	nucleus	37.34	34.12
TraesCS7B01G030300.1	Wheat	plastid	35.39	33.85
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.74	32.92
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	35.06	32.43
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	34.09	31.91
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	28.57	31.88
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	33.12	31.78
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	34.74	31.75
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	30.19	31.74
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	28.25	31.52
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	33.77	31.42
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	33.77	31.33
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	32.47	31.15
KXG32016	Sorghum	cytosol	32.47	31.06
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	32.47	30.58
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	32.47	30.58
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	32.47	30.58
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	30.52	30.32
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	32.14	30.28
TraesCS3B01G573000.1	Wheat	cytosol	31.17	30.09
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	31.82	29.97
TraesCS3B01G053300.1	Wheat	plastid	19.81	29.9
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	31.49	29.66
TraesCS3B01G054000.1	Wheat	cytosol	26.3	25.88
TraesCS3B01G028000.1	Wheat	mitochondrion	21.43	25.0
TraesCS3B01G116800.1	Wheat	cytosol	26.3	24.55
TraesCS7B01G197600.1	Wheat	cytosol	18.83	22.83
TraesCS6B01G375700.1	Wheat	plastid	24.68	21.47
TraesCS3B01G018200.1	Wheat	plastid	29.87	21.05
TraesCS6B01G375600.1	Wheat	plastid	23.7	21.04
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	28.25	17.72
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.97	13.47
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	29.55	13.38
TraesCS1B01G344300.1	Wheat	nucleus	26.95	9.74

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7B01G351200	EnsemblPlants:TraesCS7B01G351200.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:-:608300510..608301600

Molecular Weight (calculated)

32300.9 Da

IEP (calculated)

7.399

GRAVY (calculated)

0.050

Length

308 amino acids

Sequence
(BLAST)

001: MEGGESSGKR ASAEEEGEVL MMMQDGGGGG GALVAAESMA PAQIDVRMDL TLLHCQGCLL PLKPPVFKCE AAGHVVCYHC RAVHGTICSR ASTHCGELDA
101: VVGAAKVPCP YRVFGCERHV VYHEAADHQR ACQCAPCSCP DPACGFAGSR AALLDHFAAV HRRPAVTVRY SRARDIGLSV SHRWNALVGE EDGSVFLVSL
201: GPLGAATAVS LVCVRPDGEA APQFWCKLSV ERLGGNNRDR LVLMASAVSS SALSTGAPAP GQGMFLAVPQ ELLSGDTLTL TVRIDLIRSA AAAPKSTTPQ
301: ARTPRRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.