Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G197600.1 | Wheat | cytosol | 48.04 | 38.58 |
| TraesCS7D01G107300.1 | Wheat | nucleus | 90.2 | 38.1 |
| TraesCS7B01G147600.1 | Wheat | plastid | 35.29 | 31.58 |
| TraesCS4B01G105700.1 | Wheat | cytosol, nucleus, peroxisome | 71.57 | 29.74 |
| TraesCS5B01G187100.1 | Wheat | cytosol, nucleus, plastid | 32.35 | 23.91 |
| TraesCS3B01G079000.1 | Wheat | cytosol, nucleus, plastid | 36.27 | 23.79 |
| TraesCS3B01G116800.1 | Wheat | cytosol | 38.24 | 23.64 |
| TraesCS4B01G109100.1 | Wheat | cytosol, nucleus, plasma membrane | 31.86 | 23.55 |
| TraesCS3B01G028800.1 | Wheat | cytosol, nucleus, peroxisome | 38.24 | 23.42 |
| TraesCS3B01G054300.1 | Wheat | nucleus, peroxisome, plastid | 37.75 | 23.4 |
| TraesCS3B01G028000.1 | Wheat | mitochondrion | 29.9 | 23.11 |
| TraesCS7B01G030300.1 | Wheat | plastid | 36.27 | 22.98 |
| TraesCS3B01G030800.1 | Wheat | nucleus, plasma membrane, plastid | 32.84 | 22.87 |
| TraesCS6B01G375600.1 | Wheat | plastid | 38.73 | 22.77 |
| TraesCS3B01G079100.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 35.78 | 22.46 |
| TraesCS3B01G079200.1 | Wheat | cytosol, plastid | 63.24 | 21.72 |
| TraesCS3B01G055200.1 | Wheat | nucleus, plasma membrane, plastid | 30.88 | 21.5 |
| TraesCS3B01G027400.1 | Wheat | nucleus, peroxisome, plastid | 32.35 | 21.29 |
| TraesCS3B01G030900.1 | Wheat | cytosol, nucleus, plasma membrane | 33.33 | 21.18 |
| TraesCS3B01G028400.1 | Wheat | nucleus, peroxisome, plastid | 34.8 | 21.07 |
| TraesCS3B01G031000.1 | Wheat | nucleus, plasma membrane, plastid | 33.33 | 20.8 |
| OQU86433 | Sorghum | cytosol, nucleus, plastid | 35.78 | 20.45 |
| TraesCS3B01G054000.1 | Wheat | cytosol | 30.88 | 20.13 |
| TraesCS3B01G054200.1 | Wheat | nucleus, peroxisome, plastid | 32.35 | 19.88 |
| TraesCS7B01G351200.1 | Wheat | cytosol, nucleus, plastid | 29.9 | 19.81 |
| TraesCS3B01G054900.1 | Wheat | nucleus, peroxisome, plastid | 31.37 | 19.57 |
| TraesCS3B01G055000.1 | Wheat | nucleus, peroxisome, plastid | 31.37 | 19.57 |
| TraesCS3B01G055100.1 | Wheat | cytosol, nucleus, peroxisome | 31.37 | 19.57 |
| TraesCS3B01G054800.1 | Wheat | nucleus, peroxisome, plastid | 31.37 | 19.57 |
| TraesCS3B01G027500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 29.9 | 19.43 |
| TraesCS3B01G030700.1 | Wheat | nucleus, peroxisome, plastid | 29.9 | 19.0 |
| TraesCS7B01G040200.1 | Wheat | cytosol | 29.41 | 18.99 |
| EES02585 | Sorghum | cytosol, nucleus, plastid | 29.9 | 18.77 |
| TraesCS3B01G031300.1 | Wheat | nucleus, plasma membrane, plastid | 30.39 | 18.73 |
| TraesCS3B01G055300.1 | Wheat | cytosol, nucleus, peroxisome | 29.41 | 18.35 |
| TraesCS3B01G026900.1 | Wheat | nucleus | 28.43 | 18.12 |
| TraesCS6B01G375700.1 | Wheat | plastid | 31.37 | 18.08 |
| OQU86440 | Sorghum | nucleus, plasma membrane, plastid | 27.45 | 16.67 |
| TraesCS3B01G572900.1 | Wheat | cytosol | 29.41 | 16.57 |
| OQU88982 | Sorghum | plastid | 19.61 | 15.87 |
| TraesCS3B01G018200.1 | Wheat | plastid | 32.84 | 15.33 |
| TraesCS3B01G027000.1 | Wheat | cytosol, nucleus, plastid | 25.98 | 14.85 |
| TraesCS3B01G573000.1 | Wheat | cytosol | 23.04 | 14.73 |
| TraesCS3B01G018100.1 | Wheat | nucleus, peroxisome, plasma membrane | 33.82 | 10.15 |
| TraesCS1B01G344300.1 | Wheat | nucleus | 35.29 | 8.45 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF46 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G053300 | EnsemblPlants:TraesCS3B01G053300.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:27054139..27054753
Molecular Weight (calculated)
21861.2 Da
IEP (calculated)
7.544
GRAVY (calculated)
-0.147
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVVSAYKV PCPYKQHGCA SSIVYHAAAD HKAKCAHAPC YCLECTPPFE GSPADLLRHL TAPSGKHSWP TEKIKYESSH PLVVQAPSGD YRCLLVAEDG
101: IVFLLAVGAG RGPAGRRPVN VVCVRGNADA DTRPLYTGVL WVDGPLAAPG HLRGSVQVKG DVANCSVPGE VDMEQGWLHA HVNPNMLHGE SGEVHLRLRI
201: TKFP
101: IVFLLAVGAG RGPAGRRPVN VVCVRGNADA DTRPLYTGVL WVDGPLAAPG HLRGSVQVKG DVANCSVPGE VDMEQGWLHA HVNPNMLHGE SGEVHLRLRI
201: TKFP
001: MFSIVLLVVN HSRDQSIRCN IGDIRCRAME KVIEASIVPC PNAKHGCKET TTYCNQSSHE KVCKFVRCSC PVSNCNYVSS YSNLKSHACS TAHVWGEDDI
101: HFQLVIDRPR IFNMNLGRKK TVVFKEEKEG DLIVVQAFKG LEGVYVTVNR IAHMAPGIRD LSCSLAKLNE YSTLRSGSLV KKIQKVREKM HLEDDLMWIP
201: PKMLSGDHWK MQICIAYGYK FIHI
101: HFQLVIDRPR IFNMNLGRKK TVVFKEEKEG DLIVVQAFKG LEGVYVTVNR IAHMAPGIRD LSCSLAKLNE YSTLRSGSLV KKIQKVREKM HLEDDLMWIP
201: PKMLSGDHWK MQICIAYGYK FIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.