Factsheet for TraesCS3B01G055000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	97.55	97.55
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	97.25	97.25
TraesCSU01G206900.1	Wheat	cytosol	46.48	95.6
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	94.5	94.5
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	84.4	94.2
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	88.07	94.12
TraesCSU01G207000.1	Wheat	extracellular, plastid	35.78	92.86
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	88.99	90.65
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	88.99	88.99
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	84.4	84.4
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	74.31	82.94
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	80.73	82.24
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	78.29	78.53
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	73.7	74.38
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	76.15	73.89
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	74.01	72.89
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	71.25	70.39
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	65.14	64.55
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	60.55	60.92
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	60.55	60.18
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	61.16	60.06
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	55.35	58.2
TraesCS7B01G030300.1	Wheat	plastid	40.98	41.61
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	39.45	41.61
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.64	39.86
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.33	39.49
Os01t0122701-00	Rice	plastid	11.62	37.62
TraesCS7B01G147600.1	Wheat	plastid	25.99	37.28
EES00397	Sorghum	plastid	33.03	33.54
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	29.97	31.82
TraesCS3B01G053300.1	Wheat	plastid	19.57	31.37
TraesCS7B01G040200.1	Wheat	cytosol	29.66	30.7
TraesCS3B01G026900.1	Wheat	nucleus	29.66	30.31
TraesCS3B01G054000.1	Wheat	cytosol	28.13	29.39
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.83	28.98
TraesCS3B01G028000.1	Wheat	mitochondrion	22.63	28.03
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	28.13	25.77
TraesCS3B01G018200.1	Wheat	plastid	34.25	25.63
TraesCS3B01G573000.1	Wheat	cytosol	24.77	25.39
TraesCS3B01G572900.1	Wheat	cytosol	27.22	24.59
TraesCS7B01G197600.1	Wheat	cytosol	16.82	21.65
TraesCS6B01G375600.1	Wheat	plastid	22.02	20.75
TraesCS3B01G116800.1	Wheat	cytosol	20.8	20.61
TraesCS6B01G375700.1	Wheat	plastid	20.8	19.21
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	25.99	17.31
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	34.25	16.47
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.08	13.8
TraesCS1B01G344300.1	Wheat	nucleus	34.25	13.15

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G055000
EnsemblPlants:TraesCS3B01G055000.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:28455013..28456101

Molecular Weight (calculated)

34729.5 Da

IEP (calculated)

8.268

GRAVY (calculated)

0.151

Length

327 amino acids

Sequence
(BLAST)

001: MQGAAAAAER RSRASPDKAD ESSKKARLDL PDGHMKQEAA GGGDGGAILG VAYIQRVELA VRIDKQVLHC PLCTLPFKPP IFQCKAGHPA CSGCVALLPF
101: RQCKACVDGG GFFDPCPTLD TLVSSTRIGC PNVGCQWYVT YHEVTKHQKV CLYAPCRCTE PGCGYVGAPQ ALAGHLRTVH LVPVRAVQYG KVSKLQLSVS
201: TMRLVLLGDD NCVFLMTVGA LGAGVTAVSV VCARARAVTR PRFTCKMWVN LETPLAVVAN CGKEDMVLVD MHMRSSSSPG AVVAAGEPTF LTVPPMYQVP
301: AAGDGASMEV PLYIRIDKLS PWSDALV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.