Factsheet for TraesCS7B01G147600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G053300.1	Wheat	plastid	31.58	35.29
Os01t0122701-00	Rice	plastid	14.91	33.66
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	37.72	31.16
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	42.11	30.87
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	41.67	30.65
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	36.84	30.43
TraesCS3B01G028000.1	Wheat	mitochondrion	35.09	30.3
TraesCS7B01G030300.1	Wheat	plastid	41.23	29.19
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	41.23	28.92
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	36.84	28.67
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	35.53	27.65
EES00397	Sorghum	plastid	39.04	27.64
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	37.72	26.79
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	38.16	26.44
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	37.72	26.3
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	37.72	26.3
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	38.16	26.13
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	37.28	25.99
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	37.28	25.99
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	37.72	25.9
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	38.16	25.82
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	34.21	25.32
TraesCS7B01G040200.1	Wheat	cytosol	35.09	25.32
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	35.53	25.23
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	35.96	25.08
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	35.96	25.08
TraesCS3B01G054000.1	Wheat	cytosol	33.33	24.28
TraesCS3B01G026900.1	Wheat	nucleus	33.77	24.06
TraesCS7B01G197600.1	Wheat	cytosol	26.75	24.02
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.46	23.57
TraesCS3B01G018200.1	Wheat	plastid	44.3	23.11
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	32.89	22.66
TraesCS3B01G116800.1	Wheat	cytosol	30.7	21.21
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	31.58	20.17
TraesCS3B01G572900.1	Wheat	cytosol	31.14	19.61
TraesCS6B01G375600.1	Wheat	plastid	29.82	19.6
TraesCS3B01G573000.1	Wheat	cytosol	25.88	18.5
TraesCS6B01G375700.1	Wheat	plastid	25.0	16.1
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	33.77	15.68
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	45.18	15.15
TraesCS1B01G344300.1	Wheat	nucleus	45.61	12.21
TraesCS3B01G079200.1	Wheat	cytosol, plastid	31.14	11.95

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7B01G147600	EnsemblPlants:TraesCS7B01G147600.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:193949873..193950559

Molecular Weight (calculated)

24410.3 Da

IEP (calculated)

7.020

GRAVY (calculated)

0.013

Length

228 amino acids

Sequence
(BLAST)

001: MQCAAGCHTA CSRCQSKLPG KRCHSCDQGG AYVRCPVMDG IVCSARVRCA YHQHGCPSYV PYYEPRDHES VCPHAPCSCT EPGCAFVGSP RRFLAHLIDA
101: HSWPVHTIRY GTHLGLGVRA SEPRVLLVAA EEDEAVFLLA IGALGPARAV SVVCVRANGE AGQQYGLKLW AHASNERAIT LDCEVTSSAA PGEVAVETVE
201: FLTVPPAKMT GPQADKEMVI TVCIDKSF

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.