Factsheet for TraesCS3B01G030900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	91.28	89.6
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	90.65	88.99
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	90.34	88.69
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	90.03	88.38
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	80.37	88.05
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	89.41	87.77
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	88.78	87.16
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	79.13	86.69
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	86.29	86.29
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	83.18	81.9
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	79.75	79.01
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	75.39	73.11
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	76.64	73.0
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	74.45	71.99
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	68.54	66.67
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	64.8	62.46
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	61.99	61.23
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	61.37	59.88
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	57.32	59.16
TraesCS7B01G030300.1	Wheat	plastid	43.61	43.48
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	39.88	41.29
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	34.27	39.86
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.96	39.49
TraesCS7B01G147600.1	Wheat	plastid	26.79	37.72
Os01t0122701-00	Rice	plastid	11.84	37.62
EES00397	Sorghum	plastid	36.45	36.34
TraesCS3B01G053300.1	Wheat	plastid	21.18	33.33
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.78	33.12
TraesCS7B01G040200.1	Wheat	cytosol	30.53	31.01
TraesCS3B01G054000.1	Wheat	cytosol	30.22	30.99
TraesCS3B01G026900.1	Wheat	nucleus	30.84	30.94
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.35	28.98
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	30.84	27.73
TraesCS3B01G028000.1	Wheat	mitochondrion	22.74	27.65
TraesCS3B01G018200.1	Wheat	plastid	34.89	25.63
TraesCS3B01G573000.1	Wheat	cytosol	25.23	25.39
TraesCS3B01G572900.1	Wheat	cytosol	28.35	25.14
TraesCS7B01G197600.1	Wheat	cytosol	17.76	22.44
TraesCS6B01G375600.1	Wheat	plastid	23.36	21.61
TraesCS3B01G116800.1	Wheat	cytosol	22.12	21.52
TraesCS6B01G375700.1	Wheat	plastid	21.5	19.49
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	27.41	17.92
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	35.2	16.62
TraesCS3B01G079200.1	Wheat	cytosol, plastid	27.41	14.81
TraesCS1B01G344300.1	Wheat	nucleus	35.51	13.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G030900	EnsemblPlants:TraesCS3B01G030900.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:14064789..14065859

Molecular Weight (calculated)

33613.1 Da

IEP (calculated)

8.077

GRAVY (calculated)

0.185

Length

321 amino acids

Sequence
(BLAST)

001: MQGAAAAAER RSRASPDKAD ESSKKARLDL PDGHMKQEAA GGGDGGAIVG AAYIQRVELA VRIDKQVLHC PLCTLPFKPP VFQCKAGHPA CGSCVALLPF
101: GQCKACVDGG GFFDPCPALD GVVSSTRIGC PNAGCQWYVI YHEVAEHQKV CPHAPCRCTE PGCGYVGAPQ ALAGHLHTVH LVPVRAVQYG KVIKLQLPVS
201: TTRLVLLGDD NCVFLMTVGA LGAGVTAVSV VCARARAATR PRFTCKMWVN LETPLAAVAN CGKEGMVLVD MHMRSSSSPG AVVAAGEPTF LTVPPMYLVP
301: VAGDGASMEV PLYIRIDKLS P

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.