Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G016900.1 | Wheat | nucleus, plasma membrane, plastid | 86.57 | 38.67 |
| TraesCSU01G046200.1 | Wheat | nucleus, plasma membrane, plastid | 87.31 | 38.61 |
| TraesCS3B01G027400.1 | Wheat | nucleus, peroxisome, plastid | 88.06 | 38.06 |
| Os01t0122701-00 | Rice | plastid | 24.63 | 32.67 |
| TraesCS4D01G110300.1 | Wheat | cytosol, nucleus, plasma membrane | 64.18 | 31.16 |
| TraesCS7D01G129300.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 74.63 | 31.06 |
| TraesCS3D01G055600.1 | Wheat | cytosol, nucleus, peroxisome | 60.45 | 25.55 |
| TraesCS5A01G435500.1 | Wheat | cytosol, nucleus, plastid | 53.73 | 24.32 |
| TraesCS3D01G066100.1 | Wheat | cytosol, nucleus, plastid | 43.28 | 18.53 |
| TraesCS3D01G066200.1 | Wheat | cytosol, nucleus, plastid | 44.03 | 18.04 |
| TraesCS3D01G028300.1 | Wheat | nucleus, peroxisome, plastid | 43.28 | 17.79 |
| TraesCS3D01G016100.1 | Wheat | nucleus, peroxisome, plastid | 43.28 | 17.74 |
| TraesCS3D01G015700.1 | Wheat | cytosol, nucleus, peroxisome | 42.54 | 17.54 |
| TraesCS3D01G028400.1 | Wheat | nucleus, plasma membrane, plastid | 41.04 | 16.98 |
| EES00397 | Sorghum | plastid | 35.07 | 14.6 |
| HORVU3Hr1G005470.1 | Barley | plastid | 31.34 | 13.21 |
| TraesCS7D01G440300.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 30.6 | 12.97 |
| TraesCS3D01G016200.1 | Wheat | cytosol, nucleus, peroxisome | 29.85 | 12.9 |
| TraesCS3D01G016800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 27.61 | 11.78 |
| TraesCS3D01G017100.1 | Wheat | cytosol, nucleus, plastid | 26.87 | 11.32 |
| TraesCS6D01G324500.1 | Wheat | plastid | 28.36 | 10.89 |
| TraesCS1D01G296000.1 | Wheat | nucleus, plasma membrane, plastid | 18.66 | 10.59 |
| TraesCS3D01G100700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 24.63 | 10.19 |
| TraesCS3D01G512700.1 | Wheat | cytosol | 26.87 | 10.03 |
| TraesCS3D01G017000.1 | Wheat | cytosol, nucleus, plastid | 25.37 | 9.32 |
| TraesCS3D01G018000.1 | Wheat | nucleus, peroxisome, plasma membrane | 44.03 | 8.69 |
| TraesCS3D01G017900.1 | Wheat | cytosol, nucleus, plasma membrane | 32.84 | 8.64 |
| TraesCS3D01G017300.1 | Wheat | plastid | 42.54 | 8.51 |
| TraesCS4D01G102500.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 30.6 | 7.96 |
| TraesCS7D01G107300.1 | Wheat | nucleus | 27.61 | 7.66 |
| TraesCS1D01G333100.2 | Wheat | nucleus | 37.31 | 6.2 |
| TraesCS3D01G017400.1 | Wheat | plastid | 45.52 | 5.91 |
| TraesCS7D01G071600.1 | Wheat | cytosol | 27.61 | 5.47 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G071700.1 | EnsemblPlantsGene:TraesCS7D01G071700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:SINA-like | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF46 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:42196133..42196537
Molecular Weight (calculated)
14406.5 Da
IEP (calculated)
9.216
GRAVY (calculated)
0.054
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVHAVQYGK VLQLEMPVSE RRRLLFAEED DRAFLVVGGS LGLGVLIALS VVCIRAGASP PPHYVTKVWA NGPPSAGNDR TDTVRTEIQV TSSKEPGTVA
101: VEELTFLTVP HKLLAGAGPS RRVSLHVRID KITS
101: VEELTFLTVP HKLLAGAGPS RRVSLHVRID KITS
001: MSNLPRDLSD LPRNMAEEVL SRVPMTSLRR LRFTCKKWNT LSRCRSFAKK HLVCQAKVAA KKREYKVVMM MDFRVYLMRI NLQNNVELCI KRERELLFPD
101: ASDQIYVRHV FHCDGLLLCI MKDNPRLVVC NPYSGQTRWI ETTNNPQRLD AYSYALGYNS STKSHKILSF GMMFDYVSST SAEFKIYDFN SDSWRLAVLF
201: QRMDTLQMEI WVTTKIEPNT VSWSSKFFLS VDMRELTGRY SMFSFSDASF FIDEEKKVAV VFDKGKKK
101: ASDQIYVRHV FHCDGLLLCI MKDNPRLVVC NPYSGQTRWI ETTNNPQRLD AYSYALGYNS STKSHKILSF GMMFDYVSST SAEFKIYDFN SDSWRLAVLF
201: QRMDTLQMEI WVTTKIEPNT VSWSSKFFLS VDMRELTGRY SMFSFSDASF FIDEEKKVAV VFDKGKKK
Arabidopsis Description
F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT3G23420]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.