Factsheet for TraesCSU01G040400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G020900.1	Wheat	cytosol	100.0	100.0
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	19.46	26.13
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	19.46	26.13
TraesCSU01G206900.1	Wheat	cytosol	13.42	25.16
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	23.49	21.08
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	24.83	20.73
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	20.47	20.13
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	20.81	20.13
TraesCSU01G043700.1	Wheat	cytosol	21.14	19.94
OQU88982	Sorghum	plastid	16.11	19.05
TraesCSU01G043600.1	Wheat	nucleus	21.14	18.81
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	21.14	18.81
TraesCSU01G046100.1	Wheat	cytosol	19.8	18.73
OQU86433	Sorghum	cytosol, nucleus, plastid	20.47	17.09
EES02585	Sorghum	cytosol, nucleus, plastid	17.79	16.31
OQU86440	Sorghum	nucleus, plasma membrane, plastid	17.45	15.48
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	15.44	15.03
TraesCSU01G166800.1	Wheat	plastid	19.13	8.24
TraesCSU01G166900.1	Wheat	plasma membrane	19.13	5.99
TraesCSU01G207000.1	Wheat	extracellular, plastid	0.34	0.79

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G040400	EnsemblPlants:TraesCSU01G040400.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:32306421..32307405

Molecular Weight (calculated)

32051.2 Da

IEP (calculated)

6.420

GRAVY (calculated)

-0.137

Length

298 amino acids

Sequence
(BLAST)

001: MENGGEPSIK KSRLQKEPMA VKHERAETRE SQGGEGALLA VEEAMQVPWV AAEVNPLFYL CFACQLPLRP PVHQCEGGHR VCGRCHGDRC TACDPPAAYS
101: PFPFMDDALA AVRLPCCYRA DGCGRKLMYH EAADHALQCA FAPCHCPGHG CSMWASPPAL LDHITAAHSW PVTEVGYGSP FRIAVPAPWR GGGTHLLVER
201: NDPRLFLVTL SDFGEATAVT VVCVREGTAA AAPRFRSTVW AEVASNTEEK LFRRQSTVPS SSSGGSLPGG GPPVCLLVPP DFGSESEDLF LGVRIDKL

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.