Factsheet for TraesCSU01G043700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G054000.1	Wheat	cytosol	84.18	84.98
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	80.06	81.61
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	75.32	77.78
TraesCS3B01G028000.1	Wheat	mitochondrion	63.29	75.76
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	73.1	66.19
KXG32025	Sorghum	cytosol	34.49	34.94
EES00400	Sorghum	cytosol	33.86	32.62
OQU86430	Sorghum	cytosol, nucleus, plastid	26.9	32.2
TraesCSU01G206900.1	Wheat	cytosol	15.51	30.82
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	29.11	30.36
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	29.11	29.87
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	31.33	29.55
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	31.01	29.52
TraesCSU01G043600.1	Wheat	nucleus	31.01	29.25
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	20.25	28.83
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	20.25	28.83
TraesCSU01G046100.1	Wheat	cytosol	26.9	26.98
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	25.95	26.8
TraesCSU01G207000.1	Wheat	extracellular, plastid	9.18	23.02
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	25.95	22.97
Os01t0121900-00	Rice	cytosol	20.57	21.96
TraesCSU01G040400.1	Wheat	cytosol	19.94	21.14
TraesCSU01G166800.1	Wheat	plastid	27.85	12.72
TraesCSU01G166900.1	Wheat	plasma membrane	27.22	9.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G043700	EnsemblPlants:TraesCSU01G043700.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:35208086..35209271

Molecular Weight (calculated)

33677.4 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.057

Length

316 amino acids

Sequence
(BLAST)

001: MVRTRGGKDN WVLPPDAGVP LGEDGVQLKE EDGETAATVM VPAAAAAPRV EIAVDFDKSL LDCPVCSLPL KPPVFQCPAK HAACGPCAAN LANKCPACDG
101: AYERDDAADR YLLAVRVPCP NQAYGCGSSV VYCMAGDHRL VCPHAPCRCP EPGCGFLGAP PALRGHLAER HQWQVTDIAY GSVLEIQMQA VEQGWRLLAA
201: EDGEQLFLLV ASERGVKVVR VAAPAEEEGW YRCKVWVHAP VDTDTCHMDV LMLDAKVESC PVPSEEAAMG AGGRYLPVPS DVPAPDGGGI VIRLRIDKEV
301: KASHGNKCPA VRYICS

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.