Factsheet for TraesCS3A01G029300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, plasma membrane

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 1
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G028000.1	Wheat	mitochondrion	58.45	77.27
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	67.62	77.12
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	65.9	74.19
TraesCS3B01G054000.1	Wheat	cytosol	66.19	73.8
TraesCSU01G043700.1	Wheat	cytosol	66.19	73.1
KXG32025	Sorghum	cytosol	31.52	35.26
EES00400	Sorghum	cytosol	30.95	32.93
OQU86430	Sorghum	cytosol, nucleus, plastid	24.64	32.58
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	26.93	31.76
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	28.65	30.21
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	28.37	29.91
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	28.08	29.88
TraesCS3A01G065800.1	Wheat	cytosol	16.62	29.59
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	27.51	29.09
TraesCS3A01G065900.1	Wheat	cytosol	18.62	28.38
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	25.79	28.12
TraesCS7A01G138000.1	Wheat	nucleus	25.21	27.85
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	24.64	27.13
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	17.19	27.03
TraesCS6A01G343600.1	Wheat	plastid	23.5	23.63
TraesCS3A01G505400.1	Wheat	cytosol	23.5	22.84
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	22.92	22.66
Os01t0121900-00	Rice	cytosol	18.62	21.96
TraesCS3A01G020900.1	Wheat	cytosol	18.05	21.14
TraesCS2A01G361500.1	Wheat	cytosol	18.62	20.57
TraesCS3A01G505500.1	Wheat	cytosol	17.48	19.12
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	26.36	18.04
TraesCS3A01G028000.1	Wheat	plasma membrane	26.65	14.33
TraesCS3A01G028600.1	Wheat	plastid	24.93	12.57
TraesCS3A01G028500.1	Wheat	plastid	25.79	8.72

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G029300	EnsemblPlants:TraesCS3A01G029300.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:15477504..15478646

Molecular Weight (calculated)

36965.7 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.009

Length

349 amino acids

Sequence
(BLAST)

001: MVADLRQKSS AVCTPICCPE PPHPPPLLPP PSSRIPLPLL CAGNTMVRTR GGKENWVLPP DAVQLKEEDG ETAATVMVAT AAAAAAPRVE IVVDFDKSLL
101: DCPLCSLPLK PPVFQCPAKH AACGPCAANQ ANQCPACDGA YERDEGADRY LLAVRVPCPN QAYGCGSSVV YCMAGDHRLV CPHAPCRCPE AGCGFLGAPP
201: ALRLHLAERH AWPVTDIAYG SVLEIQMQGR RLLSAEGGLR LFLLVASERG VKVVRVSAAV DEDGPSASWY RCKVWVHAPV DTDTGHMDVL MLDAKVESCA
301: VPSEEAAMSA GGRYLPVPSD VPAPDGGGIV LRLRIDKQVT ASRSPRSRA

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.