Factsheet for TraesCS3A01G028900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	90.37	89.36
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	90.37	89.36
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	85.55	82.74
TraesCS7A01G138000.1	Wheat	nucleus	52.12	58.23
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	50.99	56.25
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	50.14	55.84
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	32.01	50.9
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	36.26	37.98
TraesCS2A01G361500.1	Wheat	cytosol	33.43	37.34
TraesCS3A01G505400.1	Wheat	cytosol	37.96	37.33
EES00395	Sorghum	cytosol, nucleus, plastid	35.69	36.84
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	37.68	36.24
TraesCS3A01G505500.1	Wheat	cytosol	32.58	36.05
KXG32022	Sorghum	nucleus	32.29	33.83
KXG32016	Sorghum	cytosol	29.75	32.61
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	29.46	31.42
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	29.18	31.12
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	28.9	30.91
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	28.33	30.49
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	25.5	30.41
TraesCS3A01G065900.1	Wheat	cytosol	17.28	26.64
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	22.1	25.49
TraesCS3A01G020900.1	Wheat	cytosol	20.4	24.16
TraesCS3A01G065800.1	Wheat	cytosol	13.03	23.47
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	22.66	22.92
TraesCS6A01G343600.1	Wheat	plastid	19.26	19.6
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	21.53	14.9
TraesCS3A01G028600.1	Wheat	plastid	27.76	14.16
TraesCS3A01G028000.1	Wheat	plasma membrane	22.95	12.48
TraesCS3A01G028500.1	Wheat	plastid	24.36	8.33

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G028900	EnsemblPlants:TraesCS3A01G028900.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:+:15314855..15315997

Molecular Weight (calculated)

37351.2 Da

IEP (calculated)

7.037

GRAVY (calculated)

-0.030

Length

353 amino acids

Sequence
(BLAST)

001: MAGQDKRCLP LMPACNGEHG GKKARHQALV PVVKQEPRQE AEEEEWEEGE LTSHGGSPGA AEALVGAAPA PAPPQIDVRM DMALLHCQAC FLPLKPRVFK
101: CEAGHVVCGY CRGAHGEACG RADTHCPELD AVVGGTKVPC AYRDFGCDRF LVYHGAAEHK RACPWMPCSC PQPGCAFLGP PAALLDHCSA EHSRPIIQVR
201: YGRPWTLSLP LAQRWHVVVG QEDRSVFLVS LADLGVAATA VSLLCVRSDG AVALPAAPHF WCKLSVEHPR GDKDEMIMMA SAVSSSPLSA GLPVPGQGMF
301: LAVPHLLMSG DVLAISVRID QLQPPPPAST AVAGGAPAPA APAHARTTTR RLQ

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.