Factsheet for TraesCS4A01G201600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	84.31	83.5
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	75.69	78.62
HORVU4Hr1G016950.1	Barley	plastid	44.9	74.84
TraesCS3A01G065800.1	Wheat	cytosol	25.29	65.82
TraesCS3A01G065900.1	Wheat	cytosol	24.71	55.02
TraesCS6A01G343600.1	Wheat	plastid	20.78	30.55
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	17.65	30.41
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	13.14	30.18
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	19.22	29.61
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	18.63	28.7
EES02585	Sorghum	cytosol, nucleus, plastid	18.04	28.31
TraesCS7A01G138000.1	Wheat	nucleus	17.45	28.16
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	16.47	27.45
OQU86433	Sorghum	cytosol, nucleus, plastid	19.02	27.17
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	16.67	26.81
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	16.67	26.56
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	17.06	26.36
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	18.04	26.36
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	16.67	25.91
OQU88982	Sorghum	plastid	11.96	24.21
OQU86440	Sorghum	nucleus, plasma membrane, plastid	15.29	23.21
TraesCS3A01G505400.1	Wheat	cytosol	15.49	22.01
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	14.9	21.53
TraesCS2A01G361500.1	Wheat	cytosol	12.75	20.57
TraesCS3A01G020900.1	Wheat	cytosol	11.76	20.13
TraesCS3A01G505500.1	Wheat	cytosol	12.16	19.44
TraesCS3A01G028000.1	Wheat	plasma membrane	17.45	13.71
TraesCS3A01G028600.1	Wheat	plastid	18.04	13.29
TraesCS3A01G028500.1	Wheat	plastid	18.24	9.01

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS4A01G201600	EnsemblPlants:TraesCS4A01G201600.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:490919189..490920803

Molecular Weight (calculated)

52653.4 Da

IEP (calculated)

7.964

GRAVY (calculated)

-0.012

Length

510 amino acids

Sequence
(BLAST)

001: MAGQKKPADQ QNKRQRVSEN AESSNKKFSI KEVVGSGVTG TWPLASPSPV AKAKPIAVVK PTAATVAVTG PVATMAPASA APSPLAKAKP TAATVTVTGP
101: VATMAPAAPS PVALKTPTPA PPSLVVTMAP APAAPSPMAT MAPAQVAPSP VATKTPPPAE PSAVATMAPA QVVPSQVDTK TPALAEPSAV STKTPTLAAT
201: ATLAAVVNPP ATVKHEPEDG GVLELDEQVT AAMVAVAPAE EEAVILEVKK KWFHCAACPA PLKRPIFMCG NGHVVCCACG GGGNGNGDGG ANKHCDLCGR
301: ATAYTHIPYM DGLVDAYQVP CPYRNFGCAR SIAYHSAADH SAKCAHAPCY CFECAFQGSP ASLLRHLTEE SGRHCWPMEK IKYETCRPLV VPASEHRLLL
401: VAEEDGRVFL LAVGAGRGAA GVRPVNIVCV RGNVDADARP VYTGVLWVDG PPAGAGHLRS SLQLKGDVAN CGVPGEVDME HGRLHAHVNP EMLHGESKEI
501: HLRICITKFW

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.