Factsheet for TraesCS3A01G028000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	92.14	88.07
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	91.37	87.21
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	20.03	43.92
TraesCS3A01G028600.1	Wheat	plastid	45.92	43.06
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	18.03	35.45
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	18.03	35.35
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	16.33	32.02
TraesCS3A01G028500.1	Wheat	plastid	50.08	31.49
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	15.56	30.79
Os01t0122701-00	Rice	plastid	4.78	30.69
TraesCS3A01G065800.1	Wheat	cytosol	9.24	30.61
EES00397	Sorghum	plastid	14.95	30.12
TraesCS7A01G138000.1	Wheat	nucleus	14.18	29.11
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	14.02	28.71
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	13.41	28.43
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	9.71	28.38
TraesCS3A01G065900.1	Wheat	cytosol	9.71	27.51
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	14.33	26.65
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	13.1	26.56
TraesCS2A01G361500.1	Wheat	cytosol	12.17	25.0
TraesCS6A01G343600.1	Wheat	plastid	12.63	23.63
TraesCS3A01G505500.1	Wheat	cytosol	11.56	23.51
TraesCS3A01G505400.1	Wheat	cytosol	12.79	23.12
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	12.48	22.95
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	13.71	17.45
TraesCS3A01G020900.1	Wheat	cytosol	7.24	15.77

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G028000	EnsemblPlants:TraesCS3A01G028000.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:14924816..14931394

Molecular Weight (calculated)

71335.1 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.019

Length

649 amino acids

Sequence
(BLAST)

001: MDAYSNLPIG SSGRDKTNVH YRCSPDQLPP FMKCLSDKQI GFVMKIGFES ILSMQDFKMD KDLTLWLVDK FNCDTEKLEF DGGISIPVRP LVKFVLVIPS
101: GPIKVIEGLH VDDALYEHYT WDTRGKNAKE VAEEMCSITE EEPFCIAFMM AIFAIWLLIA YSKESRTTKK SDRLYVHVKG CVHILSVIFI DLVKHPTLIV
201: PDGFPRLSVV TTEMGCFRSK WVVAHPFGSF LPVRCLEESV YAPVLNNMPN GNTVEGVKCS DSDSNTDALV DQFAITDTDQ NNNKHPILAE LGNARTTHNT
301: SSSPIVDNLV FDTPAQSSVA APSSLTEHII FPTSGEQLQS AGPSDEPHSA QIMDSVQIPP DTTVERRRGL LLMMEKDDWS AKKAQVELSR SGQVKQAREV
401: TITMDMSLLN CSVCSRPIKP PVFECNAGHL ACYKCLIGLP YKLCQTCEHG SGFGHVRSLD ALISSLTVKC HHDGCGSYVP YYELDDHQSV CSHVPCFCTE
501: LGCGFVGSPQ ALLSHLITMH AMPVHKVHYG QVHQLRLSVP RPRCLLHGQG DDSVFLLVMG VLGVVSVVCI RAEASSWPQY AIKLQANGPP PPSSVEGSIL
601: LAMKPVTSST RPGEVTVEEL PSFLMVPPTY LVGSGASKEV SLDVCIDKM

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.