Factsheet for Os01t0180300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G021660.1	Barley	plastid	70.63	66.06
TraesCS3D01G119600.1	Wheat	plastid	71.67	65.2
TraesCS3A01G117800.2	Wheat	plastid	71.02	64.76
Zm00001d039598_P001	Maize	plastid	65.4	64.4
TraesCS3B01G137100.2	Wheat	plastid	70.37	64.17
OQU86191	Sorghum	plastid	66.45	60.52
Os05t0180400-01	Rice	plastid	51.96	53.57
GSMUA_Achr5P06220_001	Banana	plastid	43.08	40.69
Bra027196.1-P	Field mustard	plastid	34.07	36.25
Bra019290.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.23	36.07
KRH31259	Soybean	endoplasmic reticulum, golgi	20.1	36.07
PGSC0003DMT400006590	Potato	nucleus	31.59	35.8
CDX97716	Canola	plastid	33.55	35.69
CDY30128	Canola	plastid	33.55	35.69
VIT_09s0002g04750.t01	Wine grape	nucleus, plastid	32.38	34.49
KRH30491	Soybean	plastid	32.9	34.47
Solyc03g120230.2.1	Tomato	plastid	32.25	34.45
AT3G16000.1	Thale cress	plastid	32.64	34.44
CDX82420	Canola	plastid	31.33	34.14
CDX75863	Canola	plastid	31.72	34.08
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	17.62	33.92
KRH25191	Soybean	plastid	32.51	33.74
Bra001618.1-P	Field mustard	plastid	31.33	33.2
CDY21894	Canola	golgi	25.72	32.72
Bra021153.1-P	Field mustard	nucleus	13.45	25.06
CDY20172	Canola	nucleus	13.45	25.06

Protein Annotations

EMBL:AK120377	EnsemblPlants:Os01t0180300-01	EnsemblPlantsGene:Os01g0180300	EntrezGene:4325351	ncoils:Coil	PANTHER:PTHR13140
PANTHER:PTHR13140:SF659	ProteinID:BAD68082.1	ProteinID:BAF04120.1	ProteinID:BAS70721.1	RefSeq:XP_015621026.1	SEG:seg
SUPFAM:SSF57997	UniParc:UPI0000457D66	UniProt:Q5VR43	MapMan:35.1	:	:

Description

Lipoprotein, type 6 family protein. (Os01t0180300-01);Hypothetical conserved gene. (Os01t0180300-02)

Coordinates

chr1:-:4208556..4213302

Molecular Weight (calculated)

84135.6 Da

IEP (calculated)

4.696

GRAVY (calculated)

-0.688

Length

766 amino acids

Sequence
(BLAST)

001: MGYLLLAPSP APRPLAFRCR RGGRARRGAA IVASSSASSS SSSGDAGPSH SAAAAGAYVL ARRGVLLGVS ALPLLRAREA AAAAAVATPN SGDLATETKD
101: IQKPDEPQPG ETQAESPLPE ALQPESSLPV TQEQTPGNPL SGLLNAIAVA ASGVLAGLYG TSQQEKKALE SVVSSMESKL AENEAAISLM RENYEKRLLD
201: QQTAQKKQAM KFQEQEASLL DQLSSTKKTV TSLSEEFRRE KTLAEELREE IRRLESSLAQ AGDDKDVLEA KLKEKLGDVN ILQEKVSLLS QEIDNKGIRI
301: RELSSLLSSK EADYRNLCSF SDQTKESLEL AEAKIQQLEE EVHRTRNDLS SKISSIDLLN EELQALNSAK NEAEEKLSEL TKDYTDLKAS SEARESRNSE
401: LLLEKDNMIK QLDGKLSDAL SDSSKDRENI AALNKELDAT KAMLENEVAA VKSLRESLQS TEEALTDSRS EVSKLSVELD EANRMNQDLV LQISKLQDEF
501: NEMQEGLTNK LGEVESVSKA LSDELVSVKE MVHKGQEELE ATSNELASIV EARDNLKKEL LDVFKKLEST SQELVDERKT VTTLNRELEA LVKQLQMDSE
601: ARKALEADLD EATKSLDEMN RSALSLSKEL EETNSRKDTL EAEKKMLSKA LAEQQKITTE AHENTEDAQN LISRLQTEKE SFEMRARHLE EELALAKGEI
701: LRLRRQISTS RSQKAKTLPN TNASPEVSQA PDEQPVNDNQ NTSKVAAGSQ YTAKRTTRRR KGGAST

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.