CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82420	Canola	plastid	87.66	88.9
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	48.81	87.44
CDX97716	Canola	plastid	73.77	73.06
CDY30128	Canola	plastid	72.79	72.08
AT3G16000.1	Thale cress	plastid	70.41	69.15
CDY21894	Canola	golgi	54.28	64.29
CDY20172	Canola	nucleus	26.09	45.26
VIT_09s0002g04750.t01	Wine grape	nucleus, plastid	43.2	42.84
KRH30491	Soybean	plastid	41.51	40.49
KRH31259	Soybean	endoplasmic reticulum, golgi	23.84	39.81
PGSC0003DMT400006590	Potato	nucleus	37.59	39.65
KRH25191	Soybean	plastid	40.81	39.43
Solyc03g120230.2.1	Tomato	plastid	39.13	38.91
GSMUA_Achr5P06220_001	Banana	plastid	37.17	32.68
Os01t0180300-01	Rice	plastid	34.08	31.72
Zm00001d039598_P001	Maize	plastid	34.22	31.36
OQU86191	Sorghum	plastid	34.5	29.25
TraesCS1D01G120600.1	Wheat	plastid	30.01	28.76
KXG21461	Sorghum	plastid	30.29	28.72
TraesCS1B01G139100.1	Wheat	plastid	29.31	28.21
HORVU1Hr1G026750.1	Barley	plastid	29.31	28.21
Zm00001d037712_P001	Maize	plastid	29.59	28.06
TraesCS1A01G119700.1	Wheat	plastid	29.17	27.96
Os05t0180400-01	Rice	plastid	28.75	27.59
HORVU3Hr1G021660.1	Barley	plastid	30.43	26.5
TraesCS3D01G119600.1	Wheat	plastid	31.28	26.48
TraesCS3A01G117800.2	Wheat	plastid	30.72	26.07
TraesCS3B01G137100.2	Wheat	plastid	30.72	26.07

Protein Annotations

EnsemblPlants:CDX75863	EnsemblPlantsGene:GSBRNA2T00123838001	ncoils:Coil	PANTHER:PTHR13140	PANTHER:PTHR13140:SF659	ProteinID:CDX75863
ProteinID:CDX75863.1	SEG:seg	SUPFAM:SSF57997	UniParc:UPI0004EE2266	MapMan:35.1	:

Description

BnaC03g39460D

Coordinates

chrLK031805:-:1243252..1245682

Molecular Weight (calculated)

80582.2 Da

IEP (calculated)

5.059

GRAVY (calculated)

-0.812

Length

713 amino acids

Sequence
(BLAST)

001: MGGFLIGGTC SAPSPPLHSR LLPSPPPSQF LLLSSTNSKR RRPPSASLRR QDVKRRAFVL VGISVLPFFQ LQSPALADER DDNEIKTSKL NQDSEVAVSE
101: GTTSSPNTFL SLLNGLGIFS SGVLGALYAL ARKDTKAAEE TIESLKNQLK ERERALVLME KDFEARILLT QEEWNKERKK AEEERFSLIN QLNSAKEVAT
201: GLGKELSSEK KLSEELRAQV ENLQSNLSKA GEDKKALESE LREKLDLIEG IQDRINLLSL ELKDKKEEVQ SISASLAEKE AELKKLNSAY TQTSRYLAEA
301: KVEIKQLKDE VARLQSEIDS KNSTIEELNT RITTLVAEKE GYIKKLDDVT KDYSALKLTS EAREAADADV IRSREEEIQK INEKLDHAVK DANESKDKVA
401: DLTEKYEDAK RMLEIELASV QNLRHELEGT KRTLQASRER VSDLEKMLDE SRALCSKFES EVSKVSEEFD KAKKRYEENL ADERRNGEVL AREIAVEKDH
501: VKKARDEIEE LRREVEEASV KNQSLQKELV EVYKKGEATN KELKEEKETV SALEKEVKAM EKQMLMDREA MKALETDLEE AVKSLDEMNK NTATLSRELE
601: KVNTHISSLE DEKEVLQRSL EEARNASKEA KENVEDAHIV VMSLGKEREV LEKKVKKLEE DLGSAKGEIL RMRSQQQDSS VKAVNSTGDE EKSDDDKVAV
701: KKVVRRRKSS TSS

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.