CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027196.1-P	Field mustard	plastid	97.36	97.36
CDY30128	Canola	plastid	91.81	91.81
CDX82420	Canola	plastid	73.33	75.11
CDX75863	Canola	plastid	73.06	73.77
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.69	73.62
AT3G16000.1	Thale cress	plastid	74.03	73.42
CDY21894	Canola	golgi	55.0	65.78
CDY20172	Canola	nucleus	27.92	48.91
VIT_09s0002g04750.t01	Wine grape	nucleus, plastid	42.36	42.42
Solyc03g120230.2.1	Tomato	plastid	40.97	41.14
KRH31259	Soybean	endoplasmic reticulum, golgi	24.31	40.98
PGSC0003DMT400006590	Potato	nucleus	38.33	40.83
KRH30491	Soybean	plastid	40.56	39.95
KRH25191	Soybean	plastid	40.28	39.3
Os01t0180300-01	Rice	plastid	35.69	33.55
GSMUA_Achr5P06220_001	Banana	plastid	37.08	32.92
Zm00001d039598_P001	Maize	plastid	35.0	32.39
OQU86191	Sorghum	plastid	35.0	29.96
KXG21461	Sorghum	plastid	31.25	29.92
Zm00001d037712_P001	Maize	plastid	30.69	29.39
Os05t0180400-01	Rice	plastid	30.0	29.07
HORVU3Hr1G021660.1	Barley	plastid	33.06	29.06
TraesCS3D01G119600.1	Wheat	plastid	33.89	28.98
TraesCS3B01G137100.2	Wheat	plastid	33.61	28.81
TraesCS1D01G120600.1	Wheat	plastid	29.72	28.76
TraesCS1A01G119700.1	Wheat	plastid	29.58	28.63
TraesCS1B01G139100.1	Wheat	plastid	29.44	28.61
HORVU1Hr1G026750.1	Barley	plastid	29.44	28.61
TraesCS3A01G117800.2	Wheat	plastid	33.33	28.57

Protein Annotations

EnsemblPlants:CDX97716	EnsemblPlantsGene:GSBRNA2T00104971001	ncoils:Coil	PANTHER:PTHR13140	PANTHER:PTHR13140:SF659	ProteinID:CDX97716
ProteinID:CDX97716.1	SEG:seg	UniParc:UPI0004EE8DED	MapMan:35.1	:	:

Description

BnaA05g23630D

Coordinates

chrLK031900:-:1175075..1177742

Molecular Weight (calculated)

81241.7 Da

IEP (calculated)

5.023

GRAVY (calculated)

-0.819

Length

720 amino acids

Sequence
(BLAST)

001: MGFLVGATCF APSPPLPTLH SSSSSTSQFL LLRSNNVAIS KRRRPPPSAS LRRQDANDGD VSVKRRDFVL MGVSVLPFLL FRSPAMADER GDNEIKTSSK
101: LNQQTEVAVS EEGTSPNPFL SLLNGLGIFS AGVLGALYAL ARQDTQAAEE AIDSLKNQLK DRERALITKE KDFEARLQCE QEERNKERKK AQEDQLSLIS
201: QLNSAKDVVT GLGREISSEK KLCEELRVQI EGLQSNLSKA GEDKKALETT LSEKLDLVKE LQDRINSLSL ELKDKEEETQ RISTLLAAKE AELEKLSSAY
301: TQTSRDLAGA RLEIKQLKEE VTRSQTELDL KNSAIEELST RIRTLEAEKE SYIQKLDEVS KEYNALKLTS ETRTASDAEV ISRKEQEIQD LKEKLDHALK
401: AVNESKDKVA DLTEKYEDSK RMLDIELTSV KNLRHELEGT KKTLQASRER VSDLETLLDE SRALCSKFES EVSVIHAEFE KAKERYEENL AEERRNSESF
501: ASKLAVEKDH LKKAGEELEE LTREVEESSV KNQSLQKELV EVYKKAETTK KELEEEKRTV LALDKEVKAM EKQMLMEKEA RKSLETELEE AVKSLDEMNR
601: NTSTLSKELE KVNSHVSSLE DEKEVIQRSL EEAKNASKEA KENVEDAHNL VISLGKEREA LEKKVKKLEE DLGSAKGEIL RMRSQQSSVK AVNSTDDEEK
701: SDDKVTVKKA VRRRKSSTSS

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.