Factsheet for VIT_09s0002g04750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30491	Soybean	plastid	48.96	48.15
PGSC0003DMT400006590	Potato	nucleus	44.65	47.49
KRH31259	Soybean	endoplasmic reticulum, golgi	28.09	47.31
Bra019290.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.06	47.27
KRH25191	Soybean	plastid	47.15	45.94
Solyc03g120230.2.1	Tomato	plastid	45.62	45.75
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.17	45.48
AT3G16000.1	Thale cress	plastid	44.51	44.08
CDX82420	Canola	plastid	42.7	43.67
Bra001618.1-P	Field mustard	plastid	43.67	43.43
CDX75863	Canola	plastid	42.84	43.2
Bra027196.1-P	Field mustard	plastid	42.42	42.36
CDX97716	Canola	plastid	42.42	42.36
CDY30128	Canola	plastid	41.86	41.81
CDY21894	Canola	golgi	33.38	39.87
GSMUA_Achr5P06220_001	Banana	plastid	41.31	36.62
Zm00001d039598_P001	Maize	plastid	35.33	32.65
Os01t0180300-01	Rice	plastid	34.49	32.38
Zm00001d037712_P001	Maize	plastid	33.1	31.65
TraesCS1D01G120600.1	Wheat	plastid	32.55	31.45
HORVU1Hr1G026750.1	Barley	plastid	32.13	31.17
TraesCS1A01G119700.1	Wheat	plastid	32.13	31.05
TraesCS1B01G139100.1	Wheat	plastid	31.99	31.04
KXG21461	Sorghum	plastid	32.27	30.85
Os05t0180400-01	Rice	plastid	31.71	30.69
HORVU3Hr1G021660.1	Barley	plastid	34.63	30.4
OQU86191	Sorghum	plastid	35.19	30.08
CDY20172	Canola	nucleus	16.97	29.68
Bra021153.1-P	Field mustard	nucleus	16.97	29.68
TraesCS3D01G119600.1	Wheat	plastid	34.63	29.57
TraesCS3A01G117800.2	Wheat	plastid	34.35	29.4
TraesCS3B01G137100.2	Wheat	plastid	34.21	29.29

Protein Annotations

EntrezGene:100249815	wikigene:100249815	MapMan:35.1	EMBL:AM483892	ProteinID:CAN70924	ProteinID:CAN70924.1
ProteinID:CCB59489	ProteinID:CCB59489.1	ncoils:Coil	UniProt:F6HX19	EMBL:FN596494	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	GO:GO:0042646	EntrezGene:LOC100249815	wikigene:LOC100249815	PANTHER:PTHR13140	PANTHER:PTHR13140:SF659
TIGR:TC70035	UniParc:UPI00015C8BBA	ArrayExpress:VIT_09s0002g04750	EnsemblPlantsGene:VIT_09s0002g04750	EnsemblPlants:VIT_09s0002g04750.t01	unigene:Vvi.6335
RefSeq:XP_002284745	RefSeq:XP_002284745.1	RefSeq:XP_002284745.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:4297568..4302270

Molecular Weight (calculated)

81219.5 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.746

Length

719 amino acids

Sequence
(BLAST)

001: MGFVMGSSCF LHPPLHHRHR PSSSSQCALL YMRDAEKQRK HRVPMASLSH EGDSNDTIFC KRRAILFVGI SVLPFLSSRA RALEDLANED HDLNTPEKNK
101: NAEQELQEDS PPNPFLSLLN GLGIFASGVL GSLYALDQKE KAASQTTIES IKTKLKEREA AIVSLEKEFG LKLLNEEKER AKQLGKAKED LQSLMNQVQS
201: ANDIITGLGQ ELQSERRLIQ ELKAQIDNLQ TDLTKAREDK KALEEDLKLK LESIEVLQDR INLLSLEIKD KEDNVENLNS SLAQKELEFN NLISDHSQTK
301: NQLVESDLEI KGLKDELLGT QEELKSKNSL VDDLNAQVNS LIVEKDDSNR QLAALQKEFN DLRLSSEKKA AFDAKLLGEK ENELHQLEEK LKNALNEARK
401: SNATIADLTQ EKEDLSKLLA IELSNVKNLK HELQITQETL KASTNEASDL EKQLKQLRDL CLKLEAEVCT VLAESAKAKE MLQRSLDEAK QSGEVLASEL
501: MKVKELLKKT KDELQHRSHE LASVSENRDS LQKELVDVYK KAESVAQDLK EEKKAVITLN KELQALEKQT LKDKEVQKSL KTDLEEATKS LDEMNQKVFL
601: LSRDLEFANT RVSSLEDDKA MLHNALAEQK NVTQEARENI EDAHNLVMRL GKERESLEKR SKKLEEELAA AKGEILRLRS EINSSKTHVN NKPHQEVEAE
701: GNAAVRVKKS GRRRKSSSP

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.