CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021153.1-P	Field mustard	nucleus	100.0	100.0
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.42	40.7
CDY21894	Canola	golgi	45.74	31.23
CDX97716	Canola	plastid	48.91	27.92
CDY30128	Canola	plastid	48.91	27.92
CDX75863	Canola	plastid	45.26	26.09
CDX82420	Canola	plastid	44.04	25.75
AT3G16000.1	Thale cress	plastid	44.04	24.93
KRH31259	Soybean	endoplasmic reticulum, golgi	22.38	21.55
KRH30491	Soybean	plastid	30.66	17.24
Solyc03g120230.2.1	Tomato	plastid	29.68	17.02
VIT_09s0002g04750.t01	Wine grape	nucleus, plastid	29.68	16.97
KRH25191	Soybean	plastid	30.41	16.94
PGSC0003DMT400006590	Potato	nucleus	27.74	16.86
GSMUA_Achr5P06220_001	Banana	plastid	27.25	13.81
Zm00001d039598_P001	Maize	plastid	25.79	13.62
Os01t0180300-01	Rice	plastid	25.06	13.45
OQU86191	Sorghum	plastid	25.79	12.6
HORVU1Hr1G026750.1	Barley	plastid	22.14	12.28
Zm00001d037712_P001	Maize	plastid	22.38	12.23
KXG21461	Sorghum	plastid	22.14	12.1
TraesCS1B01G139100.1	Wheat	plastid	21.65	12.01
TraesCS1A01G119700.1	Wheat	plastid	21.65	11.96
TraesCS1D01G120600.1	Wheat	plastid	21.41	11.83
HORVU3Hr1G021660.1	Barley	plastid	23.36	11.72
Os05t0180400-01	Rice	plastid	21.17	11.71
TraesCS3B01G137100.2	Wheat	plastid	23.36	11.43
TraesCS3D01G119600.1	Wheat	plastid	23.36	11.4
TraesCS3A01G117800.2	Wheat	plastid	22.63	11.07

Protein Annotations

EnsemblPlants:CDY20172	EnsemblPlantsGene:GSBRNA2T00010039001	ncoils:Coil	PANTHER:PTHR33168	PANTHER:PTHR33168:SF6	ProteinID:CDY20172
ProteinID:CDY20172.1	SEG:seg	UniParc:UPI0002543BDC	UniProt:A0A078G5C5	MapMan:35.1	:

Description

BnaA01g28300DBnaA01g28300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5C5]

Coordinates

chrLK032103:-:530254..532494

Molecular Weight (calculated)

47522.2 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.975

Length

411 amino acids

Sequence
(BLAST)

001: MELCGSGINK EHQMCSKTFG YERIKDLSEN VFRLKKISRW RLMWRKIMMG MKHKKKDQVL DHCFRYDPFT YSQNFENDGT IAYHEDPDVS SKSFSARFVS
101: SSKVFTSSNI PTEQICMYTM ANKSIESQSE LKKRTYGYLS ELNTRISTLE GEEKSYTQKL DDVSKDYSAL KLTSETQAAA NAEVISRKEE EIQQMKEKLD
201: HVLKNVNESK DKVAELTEKN RRLEEDAGYK VSVIRGEFDE AKERYEEKLA EERRNSEVLA KELAVEKDLL KKARDELEVE EAVKSLDEMN KNTSTLTKEL
301: EKMNTHVSSL EDEKEVLQRT LEEANKASKE AKENMEGAYS FLMSLRKERG VIEKKVKKLE EDLGSAKGEI LRMRSQSKSV KAVNSTEDEE KSDDKVTAKK
401: VVRRRKSSTN S

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.