Factsheet for Solyc03g120230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006590	Potato	nucleus	86.89	92.16
VIT_09s0002g04750.t01	Wine grape	nucleus, plastid	45.75	45.62
KRH31259	Soybean	endoplasmic reticulum, golgi	26.64	44.73
KRH30491	Soybean	plastid	43.65	42.82
CDY30128	Canola	plastid	41.42	41.25
AT3G16000.1	Thale cress	plastid	41.7	41.18
Bra027196.1-P	Field mustard	plastid	41.28	41.11
KRH25191	Soybean	plastid	42.26	41.06
CDX97716	Canola	plastid	41.14	40.97
Bra019290.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.64	40.44
CDX82420	Canola	plastid	39.05	39.83
Bra001618.1-P	Field mustard	plastid	39.89	39.56
CDX75863	Canola	plastid	38.91	39.13
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.48	38.69
CDY21894	Canola	golgi	30.96	36.88
GSMUA_Achr5P06220_001	Banana	plastid	37.38	33.05
Os01t0180300-01	Rice	plastid	34.45	32.25
Zm00001d037712_P001	Maize	plastid	33.19	31.65
KXG21461	Sorghum	plastid	32.91	31.38
TraesCS1D01G120600.1	Wheat	plastid	32.5	31.32
TraesCS1A01G119700.1	Wheat	plastid	32.5	31.32
TraesCS1B01G139100.1	Wheat	plastid	31.8	30.77
Zm00001d039598_P001	Maize	plastid	33.33	30.72
Os05t0180400-01	Rice	plastid	31.66	30.55
HORVU1Hr1G026750.1	Barley	plastid	31.38	30.36
CDY20172	Canola	nucleus	17.02	29.68
Bra021153.1-P	Field mustard	nucleus	17.02	29.68
OQU86191	Sorghum	plastid	33.89	28.89
HORVU3Hr1G021660.1	Barley	plastid	32.36	28.33
TraesCS3D01G119600.1	Wheat	plastid	32.64	27.79
TraesCS3A01G117800.2	Wheat	plastid	32.22	27.5
TraesCS3B01G137100.2	Wheat	plastid	31.94	27.26

Protein Annotations

MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0016363	GO:GO:0042646	UniProt:K4BMH2	PANTHER:PTHR13140	PANTHER:PTHR13140:SF659	EnsemblPlantsGene:Solyc03g120230.2
EnsemblPlants:Solyc03g120230.2.1	UniParc:UPI0002766B8B	SEG:seg	:	:	:

Description

MAR-binding filament-like protein 1 [Source:Projected from Arabidopsis thaliana (AT3G16000) UniProtKB/Swiss-Prot;Acc:Q9LW85]

Coordinates

chr3:+:68688213..68693362

Molecular Weight (calculated)

81427.4 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.783

Length

717 amino acids

Sequence
(BLAST)

001: MATSCFPPFS ASSSSLCSSQ FTPLLSCPRN TQICRKKRPV MASMHSENQK ESNVCNRRSI LFVGFSVLPL LNLRARALEG LSTDSQAQPQ KEETEQTIQG
101: SAGNPFVSLL NGLGVVGSGV LGSLYALARN EKAVSDATIE SMKNKLKDKE DAFVSMKKQF ESELLSERED RNKLIRREGE ERQALVNQLK SAKTTVISLG
201: QELQNEKKLA EDLKFEIKGL QNDLMNTKED KKKLQEELKE KLDLIQVLEE KITLLTTEIK DKEVSLRSNT SKLAEKESEV NSLSDMYQQS QDQLMNLTSE
301: IKELKDEIQK RERELELKCV SEDNLNVQLN SLLLERDESK KELHAIQKEY SEFKSNSDEK VASDAKLLGE QEKRLHQLEE QLGTALSEAS KNEVLIADLT
401: REKENLRRMV DAELDNVNKL KQEIEVTQES LENSRSEVSD ITVQLEQLRD LCSKLEAEVS KLQMELEETR ASLQRNIDET KHSSELLAAE LTTTKELLKK
501: TNEEMHTMSD ELVAVSENRD SLQTELVDVY KKAEHTANEL KQEKSIVATL EEELKFLESQ ITREKELRKS LEDELEKATE SLDEINRNVL ALAEELELAT
601: SRNSSLEDER EVLRQSVSEQ KQISQEAQEN LEDAHSLVMK LGKERESLEK RAKKLEDEMA AAKGEILRLR SQINSVKAPV EDEEKVVAGE KEKVKATVTA
701: KKTTRRRKSA TVKQEEP

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.