CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97716	Canola	plastid	91.81	91.81
CDX82420	Canola	plastid	71.81	73.54
CDX75863	Canola	plastid	72.08	72.79
AT3G16000.1	Thale cress	plastid	72.5	71.9
CDY10951	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.31	71.11
CDY21894	Canola	golgi	53.75	64.29
CDY20172	Canola	nucleus	27.92	48.91
VIT_09s0002g04750.t01	Wine grape	nucleus, plastid	41.81	41.86
Solyc03g120230.2.1	Tomato	plastid	41.25	41.42
PGSC0003DMT400006590	Potato	nucleus	38.61	41.12
KRH31259	Soybean	endoplasmic reticulum, golgi	24.31	40.98
KRH30491	Soybean	plastid	40.42	39.81
KRH25191	Soybean	plastid	40.42	39.43
Os01t0180300-01	Rice	plastid	35.69	33.55
Zm00001d039598_P001	Maize	plastid	36.11	33.42
GSMUA_Achr5P06220_001	Banana	plastid	37.64	33.42
OQU86191	Sorghum	plastid	36.25	31.03
KXG21461	Sorghum	plastid	31.94	30.59
Zm00001d037712_P001	Maize	plastid	31.39	30.05
Os05t0180400-01	Rice	plastid	30.69	29.74
TraesCS1D01G120600.1	Wheat	plastid	30.28	29.3
TraesCS1B01G139100.1	Wheat	plastid	30.0	29.15
TraesCS1A01G119700.1	Wheat	plastid	30.0	29.03
HORVU1Hr1G026750.1	Barley	plastid	29.72	28.88
HORVU3Hr1G021660.1	Barley	plastid	32.78	28.82
TraesCS3D01G119600.1	Wheat	plastid	33.61	28.74
TraesCS3B01G137100.2	Wheat	plastid	32.92	28.21
TraesCS3A01G117800.2	Wheat	plastid	32.78	28.1

Protein Annotations

EnsemblPlants:CDY30128	EnsemblPlantsGene:GSBRNA2T00044698001	ncoils:Coil	PANTHER:PTHR13140	PANTHER:PTHR13140:SF659	ProteinID:CDY30128
ProteinID:CDY30128.1	SEG:seg	UniParc:UPI0004EE6070	UniProt:A0A078GZX0	MapMan:35.1	:

Description

BnaC05g37340DBnaC05g37340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZX0]

Coordinates

chrLK032249:-:253047..255884

Molecular Weight (calculated)

81015.3 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.851

Length

720 amino acids

Sequence
(BLAST)

001: MGFLVGATCF APSPPLPLHS SSSSSTSQFL LLRSNNVAIS KRRRPPPSAS LRRQDANDGD VSVKRRDFVL VGVSVLPFLQ FRSPAMADER GGNEIKTSSK
101: LNQQTEVAVS EEGTSPNPFL SLLNGLGIFS AGVLGALYAL ARQDAQAAEE AIESLKNQLK DRERALTTKE KDSEARLQHE QEERNKERKK AQEDQFSLIS
201: QLNSAKDVVT GLGREISSEK KLCEELRVQI EGLQSNLSKA SEDKTALDTK LKEKLGLIEE LQDRINSLSL ELKDKEEETQ RISTLLAAKE AELEKLNSAY
301: TQANRDLAGA KSETKQLKEE VTRSQTELEL KNSTIEELNT RISTLEAEKE SYIQKLDDVS KEYNALKLTS ETRAAADAEL ISRKEKEIQD LKEKLDHALK
401: DLNESKDEVA DLTEKYEDSK RMLDIEMTSV ENLKHELEGT RKALRASRER VSDLETLLDE SRALCSKFES EVAVVHAEFE KAKERYEENL AEERRNSESF
501: ASKLAVEKDH LKKAGEELEE LAREVEESSV KNQSLQKELV EVYKKAETTK KELEEEKRKV LALDKEVKAM EKQMLMEKEA RKSLEAELEE AVKSLDEMNR
601: NTSTLSKELE KVNSHVSSLE DEKEVLQRSL EAGKKASKEA KENVEDAHNL VISLGKEREA LEKKVKKLEE DLGSAKGEIL RMRSQQSSVK AVNSTDDEEK
701: SDDKVTVKKA VRRRKSSTSS

Best Arabidopsis Sequence Match ( AT3G16000.1 )
(BLAST)

001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS

Arabidopsis Description

MFP1MAR-binding filament-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.