Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g043160.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 86.11 | 75.86 |
| PGSC0003DMT400031416 | Potato | cytosol, mitochondrion | 27.01 | 40.95 |
| PGSC0003DMT400059688 | Potato | cytosol, mitochondrion | 33.07 | 38.94 |
| PGSC0003DMT400032748 | Potato | endoplasmic reticulum, golgi, vacuole | 43.84 | 37.52 |
| PGSC0003DMT400021703 | Potato | mitochondrion | 27.2 | 36.68 |
| PGSC0003DMT400015813 | Potato | cytosol | 33.66 | 33.99 |
| PGSC0003DMT400037865 | Potato | cytosol | 35.62 | 32.04 |
| PGSC0003DMT400085040 | Potato | cytosol | 11.55 | 28.5 |
| PGSC0003DMT400012713 | Potato | cytosol, extracellular, nucleus | 20.16 | 25.75 |
| PGSC0003DMT400030115 | Potato | mitochondrion | 24.46 | 13.57 |
| PGSC0003DMT400012716 | Potato | mitochondrion | 24.07 | 12.72 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | UniProt:M1AKL2 | PFAM:PF00331 | EnsemblPlantsGene:PGSC0003DMG400009574 |
| PGSC:PGSC0003DMG400009574 | EnsemblPlants:PGSC0003DMT400024766 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 | SMART:SM00633 |
| SUPFAM:SSF49785 | SUPFAM:SSF51445 | UniParc:UPI0002960EAE | : | : | : |
Description
Endo-1,4-beta-xylanase C [Source:PGSC_GENE;Acc:PGSC0003DMG400009574]
Coordinates
chr11:-:29031258..29037011
Molecular Weight (calculated)
59050.8 Da
IEP (calculated)
9.094
GRAVY (calculated)
-0.438
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: CLAEPQHVQY KGGKLINPKF DLGLHGWEAW VRVSEGSETT VSAAIITKEN SKRVIASGNA YPGCWTMLKG GFQPEFPLPT ELYFVCYNKT VDFWVDNVSL
101: KEFNKTEWLQ HQQRAITRVR KRKIVLDIKD KLGKAIRGVK VNIKFTKPYF HIGCGVTDTL LQHKKYQEWF LKKGFTASVF TNQMKWYWTE SRRGIENYTI
201: PDAMFQFFKK NKIEIRGHTV LWDKPKMNQY WLHDMTPKEL LATAVRRLAS IMARYSNDIF EWDVVNENLH FKFFEEKIGP QASGMFYHIA HVIDPNATLY
301: LNEFNTLEIP GDVYAGPHKY INKWRQIRSY PGNEDLTIGF GLQAHFGLGK PLMPYIRAAL DFFSETQMPI WLTEMDVPNN SNQALYLEEI MREAFSHPGV
401: EGIIVWAPWK PGMNCTSLCL MDDNFNNTPA GDIVDKLMAE WRTPDQNGKT NSEGLYRYDG FLGDYNVTLD HVRGGQAAWW PRLRGPGRVQ RAHIRGVPTA
501: FAGHDSSWPR L
101: KEFNKTEWLQ HQQRAITRVR KRKIVLDIKD KLGKAIRGVK VNIKFTKPYF HIGCGVTDTL LQHKKYQEWF LKKGFTASVF TNQMKWYWTE SRRGIENYTI
201: PDAMFQFFKK NKIEIRGHTV LWDKPKMNQY WLHDMTPKEL LATAVRRLAS IMARYSNDIF EWDVVNENLH FKFFEEKIGP QASGMFYHIA HVIDPNATLY
301: LNEFNTLEIP GDVYAGPHKY INKWRQIRSY PGNEDLTIGF GLQAHFGLGK PLMPYIRAAL DFFSETQMPI WLTEMDVPNN SNQALYLEEI MREAFSHPGV
401: EGIIVWAPWK PGMNCTSLCL MDDNFNNTPA GDIVDKLMAE WRTPDQNGKT NSEGLYRYDG FLGDYNVTLD HVRGGQAAWW PRLRGPGRVQ RAHIRGVPTA
501: FAGHDSSWPR L
001: MNSIKNGFFL CMIFLLWCHV DSGVSIDPFS HSHSLNTECV MKPPRSSETK GLLQFSRSLE DDSDEEWKID GNGFIREMAQ RIQLHQGNIY SFSAWVKLRE
101: GNDKKVGVVF RTENGRLVHG GEVRANQECW TLLKGGIVPD FSGPVDIFFE SENRGAKISA HNVLLKQFSK EEWKLKQDQL IEKIRKSKVR FEVTYENKTA
201: VKGVVISLKQ TKSSFLLGCG MNFRILQSQG YRKWFASRFK ITSFTNEMKW YATEKARGQE NYTVADSMLK FAEDNGILVR GHTVLWDNPK MQPSWVKNIK
301: DPNDVMNVTL NRINSVMKRY KGKLTGWDVV NENLHWDYFE KMLGANASTS FYNLAFKIDP DVRLFVNEYN TIENTKEFTA TPIKVKKMME EILAYPGNKN
401: MKGAIGAQGH FGPTQPNLAY IRSALDTLGS LGLPIWLTEV DMPKCPNQAQ YVEDILREAY SHPAVKGIII FGGPEVSGFD KLTLADKDFN NTQTGDVIDK
501: LLKEWQQKSS EIQTNFTADS DNEEEEVSLL HGHYNVNVSH PWIANLSTSF SLEVTKEMDQ DQVIRVVISA
101: GNDKKVGVVF RTENGRLVHG GEVRANQECW TLLKGGIVPD FSGPVDIFFE SENRGAKISA HNVLLKQFSK EEWKLKQDQL IEKIRKSKVR FEVTYENKTA
201: VKGVVISLKQ TKSSFLLGCG MNFRILQSQG YRKWFASRFK ITSFTNEMKW YATEKARGQE NYTVADSMLK FAEDNGILVR GHTVLWDNPK MQPSWVKNIK
301: DPNDVMNVTL NRINSVMKRY KGKLTGWDVV NENLHWDYFE KMLGANASTS FYNLAFKIDP DVRLFVNEYN TIENTKEFTA TPIKVKKMME EILAYPGNKN
401: MKGAIGAQGH FGPTQPNLAY IRSALDTLGS LGLPIWLTEV DMPKCPNQAQ YVEDILREAY SHPAVKGIII FGGPEVSGFD KLTLADKDFN NTQTGDVIDK
501: LLKEWQQKSS EIQTNFTADS DNEEEEVSLL HGHYNVNVSH PWIANLSTSF SLEVTKEMDQ DQVIRVVISA
Arabidopsis Description
Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84WT5]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.