Factsheet for PGSC0003DMT400030115

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
vacuole 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088210.1.1	Tomato	mitochondrion	95.98	95.98
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	33.12	76.25
PGSC0003DMT400012716	Potato	mitochondrion	76.66	73.01
KRH52165	Soybean	cytosol, nucleus	58.41	72.51
KRH61477	Soybean	cytosol	57.98	72.06
KRH15483	Soybean	mitochondrion	68.62	67.96
KRH05535	Soybean	mitochondrion	68.51	67.78
VIT_18s0001g08370.t01	Wine grape	mitochondrion	69.16	67.27
Bra027867.1-P	Field mustard	cytosol	63.52	63.52
CDY48844	Canola	cytosol	63.3	63.3
CDY53797	Canola	cytosol	63.3	63.3
AT4G08160.1	Thale cress	cytosol	51.25	62.77
AT1G58370.2	Thale cress	cytosol	64.17	62.54
CDY29140	Canola	cytosol	49.73	53.69
CDX75175	Canola	cytosol	49.84	48.11
Bra039768.1-P	Field mustard	cytosol	50.92	47.66
HORVU2Hr1G021350.12	Barley	mitochondrion	55.59	46.42
TraesCS2D01G124900.1	Wheat	mitochondrion	55.16	46.18
TraesCS2A01G122200.1	Wheat	mitochondrion	54.94	46.0
EER96324	Sorghum	mitochondrion	54.18	45.45
Os07t0456700-01	Rice	plasma membrane	54.29	45.41
TraesCS2B01G144300.3	Wheat	mitochondrion	55.16	44.96
Zm00001d019586_P008	Maize	mitochondrion	53.64	44.95
GSMUA_Achr1P24570_001	Banana	cytosol	53.85	41.86
PGSC0003DMT400021703	Potato	mitochondrion	14.66	35.62
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	12.16	33.23
PGSC0003DMT400015813	Potato	cytosol	17.48	31.82
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	14.44	30.65
PGSC0003DMT400037865	Potato	cytosol	16.4	26.58
PGSC0003DMT400085040	Potato	cytosol	5.75	25.6
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	16.4	25.29
PGSC0003DMT400024766	Potato	cytosol	13.57	24.46

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	InterPro:CenC_carb-bd	ncoils:Coil	InterPro:GH10
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979
UniProt:M1ATS0	PFAM:PF00331	PFAM:PF02018	EnsemblPlantsGene:PGSC0003DMG402011539	PGSC:PGSC0003DMG402011539	EnsemblPlants:PGSC0003DMT400030115
PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785
SUPFAM:SSF51445	UniParc:UPI000295E3DF	SEG:seg	:	:	:

Description

Xylanase Xyn1 [Source:PGSC_GENE;Acc:PGSC0003DMG402011539]

Coordinates

chr12:+:56062858..56068288

Molecular Weight (calculated)

102976.0 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.304

Length

921 amino acids

Sequence
(BLAST)

001: MKGLSASSFA RRIFKSNSQS PKENRENTGS YDAINVILNH DFSEELHLWR TNCCNAFVVP AGSGNYKGTA EDVGCSYAVV TNRTECWQGL EQDITSRISA
101: GCDYTVFACV GVSGTFHGST DILATLRLVY QNADTDYLFI SKKSVTGEGW HMLKGSFSLS TKPDQVIFYL EGPSPGSDLL IKSVIITSPG CTDYESSRPT
201: SSCTDDEEII VNANFDYSLN SWSGRGCKVV CHDCMADANI NPTSGKYFAS ATERTQSWNG IQQDITGRIK RKLAYEMTAI VRLYGHNANT ADVRGTLWVQ
301: AADNREQYIG IAKVQATDKD WVQLQGKFLL NDSPSKAVVF LEGPPPGTDI LLNSLVVNHA VKLPPPPPPV VVNAVFGVNI ITNTHLNNGT NGWFPLGNCR
401: MSVQTGSPHI IPPMARDSLG SHENLSGRYI AVTNRTEPWM GPAQVITDKV KLYLTYQVSA WVKVRHASGP QNVSVALGVD DQWVNGGQVE VNDDQWHEIG
501: GSFRIEKQAA KVMVYVQGPG AGVDLMVAGL HIFPVDRHAR FNHLKRQMEK IRKRDVILKF SRSDLVSLHG TSVRVRQQQN SFPFGSCICR TNMDNEDFND
601: FFVKNFNWAV FGNELKWYST EAQRGKFNYR DADELLDFCL RHNIQVRGHC IFWEVESTVQ EWIRSLNNND LTTALQNRLS GLLTRYKGKF KHYDVNNEMM
701: HGSYYQERLG KDIWANMFKK AHQLDPSVIL FVNDYHVEDG CDTRSSPEKY IEHILDLQDQ GAPVGGIGIQ GHIDCPVGPI ICSALDKLSI LGLPIWFTEV
801: DVSSNNEHVR ADDLEVMLRE SFAHPAVEGV ILWGFWELFM SRENAHLVNA EGELNEAGKR YLALKQEWLS HAHGHIDDQG QFSFRGFHGS YEVDFVTASM
901: KITKTFVVDK GDDALVISID I

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.