CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G08160.1	Thale cress	cytosol	76.2	86.44
CDX75175	Canola	cytosol	95.19	85.12
Bra039768.1-P	Field mustard	cytosol	81.48	70.63
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	31.65	67.5
KRH61477	Soybean	cytosol	57.21	65.86
KRH52165	Soybean	cytosol, nucleus	57.21	65.77
CDY53797	Canola	cytosol	58.5	54.18
CDY48844	Canola	cytosol	58.5	54.18
KRH15483	Soybean	mitochondrion	56.74	52.04
VIT_18s0001g08370.t01	Wine grape	mitochondrion	57.56	51.85
KRH05535	Soybean	mitochondrion	56.51	51.77
Solyc12g088210.1.1	Tomato	mitochondrion	54.51	50.49
PGSC0003DMT400030115	Potato	mitochondrion	53.69	49.73
PGSC0003DMT400012716	Potato	mitochondrion	54.51	48.09
Solyc04g077190.2.1	Tomato	extracellular	56.86	42.4
HORVU2Hr1G021350.12	Barley	mitochondrion	46.07	35.63
CDX72432	Canola	cytosol	6.45	35.48
TraesCS2D01G124900.1	Wheat	mitochondrion	45.6	35.36
TraesCS2A01G122200.1	Wheat	mitochondrion	45.6	35.36
Os07t0456700-01	Rice	plasma membrane	45.13	34.97
EER96324	Sorghum	mitochondrion	44.78	34.79
Zm00001d019586_P008	Maize	mitochondrion	44.78	34.76
TraesCS2B01G144300.3	Wheat	mitochondrion	45.6	34.42
GSMUA_Achr1P24570_001	Banana	cytosol	44.67	32.15
CDY53833	Canola	endoplasmic reticulum, extracellular	52.64	30.88
CDY22606	Canola	endoplasmic reticulum, vacuole	52.4	30.7
CDX90288	Canola	endoplasmic reticulum, extracellular	19.46	29.43
CDY12095	Canola	vacuole	15.47	27.1
CDY48434	Canola	vacuole	17.47	26.0
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	17.23	25.65
CDX72430	Canola	extracellular, vacuole	17.0	25.57
CDX71170	Canola	cytosol, plastid, vacuole	13.6	25.55
CDY69164	Canola	vacuole	17.12	25.48
CDY49598	Canola	cytosol	5.63	25.4
CDY28323	Canola	vacuole	16.53	25.31
CDY49377	Canola	extracellular, vacuole	16.88	25.26
CDY48433	Canola	vacuole	16.65	24.52
CDY28325	Canola	vacuole	16.65	24.52
CDY49378	Canola	plasma membrane, vacuole	16.3	24.3
CDY49599	Canola	extracellular, vacuole	9.14	22.03
CDX72434	Canola	cytosol, vacuole	16.41	15.96

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	GO:A0A078GRN6	UniProt:A0A078GRN6	EnsemblPlants:CDY29140
ProteinID:CDY29140	ProteinID:CDY29140.1	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
EnsemblPlantsGene:GSBRNA2T00041958001	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331
PFAM:PF02018	PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	MetaCyc:PWY-6784
SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniPathway:UPA00114	UniParc:UPI0004EE3FD6	SEG:seg

Description

BnaA09g53930DBnaA09g53930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRN6]

Coordinates

chrLK032231:+:222725..231466

Molecular Weight (calculated)

96350.7 Da

IEP (calculated)

5.626

GRAVY (calculated)

-0.267

Length

853 amino acids

Sequence
(BLAST)

001: MEKNTKVTLA NDAEDDKVHH HTNKEQDSII LNPNFEDGLN NWNGRGCKAV LHESMDGGKI VPLSGHVFAA ATERKAAWNG IQQEISGRCQ RKRVYEVTSV
101: VRIFGNNATS ATVQATLWVL NANQREQYIA IANVQASNKD WVELKGKFLI HGSPSRIILY LEGPPPGTDI LVNTLDVKHA RRNRPSPPPF YENPGFGINI
201: VENSEVRDGE TQPWFTLGNC KLGVGQGAPR TLPPMARETL GSHKPLGGSY ILVTNRSQTW MGPAQMITDK IKLFLTYQIS AWVKLSVGAS SGINPQNVNI
301: ALSVDNQWVN GGQVEVSVGE TWHELGGSFR LEKQPQNVMV YVQGPAAGID LMIAGLQIFP VDRRERIRCL KKQVDEVRKR DIILKFSGLD ESCDLFPYIV
401: KVKQTHNSFP VGTCINRTDI DNEDFVDFFI KNFNWAVFGN ELKWYWTEAE RGKLNYQDAD DMLDLCIGNN INVRGHCIFW EVESTVQPWV RQLNKTELMN
501: AVQKRLTDIL TRYKGKFKHY DVNNEMLHGS FYQDRLGKGV RALMFNIAHK LDPSALLFVN DYHVEDGDDT RSSPEKYSRL VLELEAQGAP IGGIGIQGHI
601: DSPVGAIVSS ALDNLSVLGH PIWFTELDVS SRNEFVRGED LEVMLWEAFA HPAVEGIMLW GFWELSMSRE NSNLVEGEGE VNEAGKRFLD VKQEWLSHAY
701: GIISDESEFI FRGYHGTYAV EVCTPAGIVL KTFVVEKGES PLILDRLILC LGCFWIQFQK INPVPTKSFS DLESDCFLPM VLVQVPMCNE KELNDDGFDF
801: DLSFFFVLIA DTRGVEGFNH PQITIDVDDF DLSFFLRSRR RGFQHLSFFL RSR

Best Arabidopsis Sequence Match ( AT4G08160.1 )
(BLAST)

001: MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL

Arabidopsis Description

Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.