Factsheet for Solyc04g077190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 5
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012716	Potato	mitochondrion	81.38	96.28
Solyc12g088210.1.1	Tomato	mitochondrion	61.1	75.9
KRH52165	Soybean	cytosol, nucleus	49.21	75.88
KRH61477	Soybean	cytosol	48.86	75.44
VIT_18s0001g08370.t01	Wine grape	mitochondrion	59.18	71.49
KRH15483	Soybean	mitochondrion	57.43	70.65
KRH05535	Soybean	mitochondrion	57.17	70.25
Solyc04g077200.1.1	Tomato	cytosol	6.29	69.9
Bra027867.1-P	Field mustard	cytosol	53.32	66.23
CDY48844	Canola	cytosol	53.06	65.91
CDY53797	Canola	cytosol	52.97	65.8
AT1G58370.2	Thale cress	cytosol	53.93	65.29
AT4G08160.1	Thale cress	cytosol	41.7	63.43
CDY29140	Canola	cytosol	42.4	56.86
CDX75175	Canola	cytosol	42.22	50.63
Bra039768.1-P	Field mustard	cytosol	41.61	48.37
HORVU2Hr1G021350.12	Barley	mitochondrion	45.02	46.69
TraesCS2A01G122200.1	Wheat	mitochondrion	44.67	46.45
TraesCS2D01G124900.1	Wheat	mitochondrion	44.58	46.36
EER96324	Sorghum	mitochondrion	44.32	46.17
Os07t0456700-01	Rice	plasma membrane	44.23	45.96
Zm00001d019586_P008	Maize	mitochondrion	44.06	45.86
TraesCS2B01G144300.3	Wheat	mitochondrion	44.49	45.04
GSMUA_Achr1P24570_001	Banana	cytosol	43.62	42.11
Solyc11g040330.1.1	Tomato	extracellular	15.04	31.33
Solyc01g111340.2.1	Tomato	extracellular	14.86	31.08
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	15.38	30.09
Solyc10g055340.1.1	Tomato	cytosol	5.33	27.73
Solyc10g055370.1.1	Tomato	vacuole	13.46	27.45
Solyc01g105500.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	13.64	27.18
Solyc05g051260.2.1	Tomato	golgi, vacuole	13.55	26.86
Solyc01g106990.1.1	Tomato	vacuole	12.15	24.09
Solyc11g043160.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	11.98	23.62
Solyc01g106980.1.1	Tomato	cytosol	13.81	14.31

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:K4BUF6
PFAM:PF00331	PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	EnsemblPlantsGene:Solyc04g077190.2	EnsemblPlants:Solyc04g077190.2.1	UniParc:UPI000276625E	SEG:seg

Description

No Description!

Coordinates

chr4:+:62114950..62122401

Molecular Weight (calculated)

126351.0 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.309

Length

1144 amino acids

Sequence
(BLAST)

0001: MKRLCAFSFA RRLFKPRTTH SQESKEKMEQ SPIVNVEDNF DLQESKESME KSPTVTANNN FDTQSATENE KENGSYAATN IILNHEFSDG LHSWHPNCCD
0101: AFVVPAGSGY HKGLAAKEGC CYAVVSNRKE CWQGLEQDIT SRVSAGSTYT VSACVGATGT FQGSVEVLAT LKLVYQNSET SYLFVAKKAA SEECWETLEG
0201: SFSLSTMPDQ VIFYLEGPPA GTDLLIKSVV ISCPSSTASD SSGTSSVYID DDNIIINPQF DDGLNSWSGR GCKVALHDSM ADGKITPMSG KSFASATERT
0301: QSWNGIQQDV TGRVKRKLAY EVSAVVRIYG NNVTTADLRS TLYVKAADNR ERYIGIASVQ ATDKDWVKLQ GKFLINDSPS QVVVFLEGPP AGTDILLNNL
0401: VIKHAAKAPP SSPPVIEDAG FGVNIITNTS LNDGTNGWFP LGNCTMSVQT GSPHIMPPMA RDTLGAHEPL SGRYILVANR TQNWMGPAQM ITEKVKLYLT
0501: YQVSAWVKIG QTSGPQNVNV ALGVDSQWVN GGQAEISDDR WHEIGGSFRI EKQAAKIMVY IQGPVAGVDL MVAGLQIFPV DRRERFRHLK KQTAKLRKRD
0601: VMLKFSGSDS GNLFGTFVRV KQLQNSFPFG SAISRTNMDN EDFNAFFVKN FNWAVFGNEL KWYWTEAQQG NLNYKDADEL LDFCTKNNIQ VRGHCIFWEV
0701: VGTVQAWVQS LNKNDLMTAV QNRLTGLLTR YKGKFPHYDV NNEMMHGSFY QDRLGKDIRV NMFKTAHQLD PSPILFVNDY HVEDGCDTRS YPEKYIEHIL
0801: DLQEHGAPVG GIGIQGHIDS PVGPIVCSAL DKLGTLGLPI WFTEVDVSSD NEYVRADDLE VMLREAYAHP AVEGIMLWGF WELFMSRTNA HLVDAEGDIN
0901: EAGKRYLALK HEWSSHPHGH IDEQGQFSFS GFHGSYEVEV VTVSKKITKK FVVDKGDNAL SSKENGNIIL NHEFLDGLHL WRPNCCHAFV VPAGSGYRNG
1001: LTMAVVTKST IWWQGLEQDI TSRVSAGSSC TASDESKQEM EKAPPTITLI LSSKEDEKDT GNIILNHDFS YGLYLWNPNC CEAFVVPSGY HKGLAAAIVT
1101: NRRECWHGLE QDITSKVSEG STYTVSACVG ASGTCPGSVE LTCS

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.