Factsheet for Solyc01g106990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	51.82	51.11
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	48.7	51.0
VIT_03s0091g00950.t01	Wine grape	cytosol	48.18	50.36
VIT_03s0091g00880.t01	Wine grape	vacuole	50.95	49.41
KRH29254	Soybean	cytosol	48.18	49.12
AT4G33860.1	Thale cress	plasma membrane, vacuole	48.87	48.96
CDY28323	Canola	vacuole	47.14	48.83
AT4G33840.1	Thale cress	vacuole	48.18	48.26
CDY48434	Canola	vacuole	47.83	48.17
VIT_03s0091g00900.t01	Wine grape	cytosol	46.45	48.11
Bra034584.1-P	Field mustard	vacuole	47.49	47.82
Solyc05g051260.2.1	Tomato	golgi, vacuole	47.49	47.49
CDY69164	Canola	vacuole	46.97	47.29
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	46.97	47.29
Bra034585.1-P	Field mustard	vacuole	46.79	47.12
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	46.1	46.34
CDY48433	Canola	vacuole	46.27	46.11
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	45.23	45.87
CDY28325	Canola	vacuole	45.75	45.6
KXG39936	Sorghum	extracellular, vacuole	45.58	45.58
KRH29253	Soybean	extracellular, vacuole	44.37	45.23
AT4G33830.1	Thale cress	vacuole	45.06	45.14
CDY49378	Canola	plasma membrane, vacuole	44.71	45.1
Os03t0201500-01	Rice	vacuole	44.37	44.6
Zm00001d028103_P001	Maize	extracellular, vacuole	44.71	44.48
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.85	44.39
TraesCS4B01G259100.1	Wheat	vacuole	43.85	44.39
Solyc01g106980.1.1	Tomato	cytosol	84.92	44.38
EER92683	Sorghum	vacuole	44.71	44.18
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.85	44.08
Os03t0201901-00	Rice	cytosol	43.33	43.86
TraesCS4A01G045800.1	Wheat	vacuole	43.5	43.05
TraesCS4B01G259400.1	Wheat	vacuole	43.5	43.05
TraesCS4D01G259100.1	Wheat	vacuole	43.5	43.05
Os10t0351700-01	Rice	plasma membrane	42.98	42.69
Zm00001d048151_P001	Maize	vacuole	42.81	42.51
TraesCS5A01G196500.1	Wheat	plasma membrane, vacuole	43.15	42.42
TraesCS5A01G196600.1	Wheat	plasma membrane, vacuole	43.15	42.42
HORVU5Hr1G056740.1	Barley	vacuole	43.33	42.23
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	42.63	41.91
TraesCSU01G021800.1	Wheat	extracellular, vacuole	42.29	41.71
HORVU2Hr1G113150.1	Barley	cytosol	38.65	41.6
Zm00001d030468_P001	Maize	cytosol	42.46	41.6
HORVU1Hr1G023120.1	Barley	extracellular	40.9	41.04
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	42.81	41.03
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	40.38	40.59
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.38	40.59
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	40.38	40.59
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	40.9	40.41
TraesCS2B01G537100.1	Wheat	vacuole	40.03	40.24
TraesCS2D01G510500.1	Wheat	vacuole	40.03	40.24
HORVU4Hr1G070260.12	Barley	vacuole	42.29	39.93
Solyc01g105500.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	39.69	39.9
Bra017609.1-P	Field mustard	nucleus	46.1	39.88
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	45.23	39.67
TraesCS2A01G584800.1	Wheat	plastid, vacuole	41.25	39.08
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	37.44	37.76
Os03t0201800-01	Rice	extracellular	37.78	37.46
Os10t0351600-00	Rice	cytosol	37.44	36.8
Solyc11g043160.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	35.53	35.34
Solyc01g111340.2.1	Tomato	extracellular	32.93	34.73
Solyc11g040330.1.1	Tomato	extracellular	32.06	33.7
Solyc10g055340.1.1	Tomato	cytosol	12.65	33.18
Solyc10g055370.1.1	Tomato	vacuole	31.54	32.44
CDX72434	Canola	cytosol, vacuole	46.1	30.33
GSMUA_Achr1P12520_001	Banana	mitochondrion	39.34	24.78
GSMUA_Achr1P12510_001	Banana	cytosol	37.44	22.55
Solyc04g077200.1.1	Tomato	cytosol	3.12	17.48
Solyc12g088210.1.1	Tomato	mitochondrion	23.05	14.44
Solyc04g077190.2.1	Tomato	extracellular	24.09	12.15

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:K4B2R6
PFAM:PF00331	PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF2	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g106990.1	EnsemblPlants:Solyc01g106990.1.1	TMHMM:TMhelix
UniParc:UPI0002767AA1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:94685903..94688282

Molecular Weight (calculated)

64573.3 Da

IEP (calculated)

6.914

GRAVY (calculated)

-0.307

Length

577 amino acids

Sequence
(BLAST)

001: MKIQVLVLVS YYLLLASIGF EVYAKDYDYS YTAECLESPL KPQYNGGIVV NPEFNDGLTG WTLSGDAKIE HNVANDGNKF IVASKRKGPY HGFSQEFQLE
101: KDKFYVISGW VQVNHGDDAN VAVIFKTQSG YQHAAWGIAK CGCWSMFKGG LVVNASGPAQ LYFETNNTEI DIWVDSISVQ SFSQEEWTSH QTQTIEKVRK
201: SKVAIQSVDS QGKALPNATI SLIQGRANFP FGCAINKNIL NNNAYQNWFF SRFKYTVFED EMKWYSNENT QGKVDYSTSD AMVNLCKSKG VSIRGQSVLW
301: DDQKFQPNWV PALSPQQLSV AAGKRVASVV RKYKGQLLHW DVMNENLHFK FFESKLGPSA SATFYHLASQ FDNKTPLFLN DYNTIEVPSD GQSSPANYLN
401: MIKQVRTGGY TGTLGIGLEG HFGAPSIPYI RAGLDTLASA KLPMWITELD VRPEQNQAQV LDQVIKEIVG HPAVQGLIIW SAWKPKGCFR MCLTDNNFKN
501: LPTGDVVDKA RATLSHEGLI GTTNAEGYFE TSLFHGDYKP IITHTSMPDS FFHHNLTVTP TAESDEKLLQ SYRCIRL

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.