Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- vacuole 4
- extracellular 3
- endoplasmic reticulum 4
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU92006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | OQU92006 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030468_P001 | Maize | cytosol | 85.22 | 87.1 |
| Os10t0351700-01 | Rice | plasma membrane | 73.09 | 75.73 |
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 72.92 | 75.04 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 72.26 | 74.49 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 71.26 | 73.08 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 71.26 | 73.08 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 71.26 | 73.08 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 73.42 | 72.58 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 71.1 | 72.3 |
| EER92684 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 50.66 | 53.32 |
| KXG39936 | Sorghum | extracellular, vacuole | 50.5 | 52.69 |
| EER92683 | Sorghum | vacuole | 50.5 | 52.05 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 46.35 | 49.03 |
| KRH29254 | Soybean | cytosol | 45.51 | 48.41 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.68 | 47.99 |
| Bra034585.1-P | Field mustard | vacuole | 45.51 | 47.82 |
| AT4G33830.1 | Thale cress | vacuole | 45.68 | 47.74 |
| CDY69164 | Canola | vacuole | 45.18 | 47.47 |
| CDY28323 | Canola | vacuole | 43.85 | 47.4 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 43.36 | 47.37 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 45.18 | 47.22 |
| AT4G33840.1 | Thale cress | vacuole | 44.85 | 46.88 |
| CDY48434 | Canola | vacuole | 44.19 | 46.42 |
| KRH29253 | Soybean | extracellular, vacuole | 43.36 | 46.11 |
| Bra034584.1-P | Field mustard | vacuole | 43.85 | 46.07 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 45.51 | 46.05 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 42.36 | 45.78 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 43.52 | 45.64 |
| CDY28325 | Canola | vacuole | 43.85 | 45.6 |
| CDY48433 | Canola | vacuole | 43.85 | 45.6 |
| CDY49378 | Canola | plasma membrane, vacuole | 42.52 | 44.76 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 41.03 | 44.75 |
| Solyc01g106990.1.1 | Tomato | vacuole | 41.03 | 42.81 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 40.03 | 41.2 |
| PGSC0003DMT400037865 | Potato | cytosol | 37.87 | 40.14 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 37.87 | 39.51 |
| Bra017609.1-P | Field mustard | nucleus | 43.19 | 38.98 |
| EER95184 | Sorghum | vacuole | 33.72 | 36.25 |
| EES10525 | Sorghum | plasma membrane, vacuole | 33.72 | 35.37 |
| CDX72434 | Canola | cytosol, vacuole | 43.36 | 29.76 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 41.86 | 27.51 |
| EES00361 | Sorghum | cytosol | 25.25 | 26.95 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 40.7 | 25.57 |
| EES00362 | Sorghum | cytosol | 25.08 | 25.42 |
| KXG30265 | Sorghum | plastid | 23.92 | 22.5 |
| Solyc01g106980.1.1 | Tomato | cytosol | 40.37 | 22.01 |
| EER93683 | Sorghum | cytosol | 26.58 | 21.39 |
| EER96324 | Sorghum | mitochondrion | 26.08 | 14.3 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | UniProt:A0A1B6Q9D2 | InterPro:GH10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | EnsemblPlants:KXG34533 | ProteinID:KXG34533 |
| ProteinID:KXG34533.1 | PFAM:PF00331 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF8 | MetaCyc:PWY-6784 |
| SMART:SM00633 | EnsemblPlantsGene:SORBI_3002G053800 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | unigene:Sbi.5528 | TMHMM:TMhelix |
| UniParc:UPI00081ABF3B | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:5123318..5126765
Molecular Weight (calculated)
66503.4 Da
IEP (calculated)
8.845
GRAVY (calculated)
-0.234
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNCETNTHK MRVLVEKLLL SLFLVAFYQG CMVLSVEYDH TASIECLGDP MKPLYKGGIV QNSEFNSGLM GWSTYRNMKA GVSSSASGNK FAVVHGAGSS
101: AVASSGKLLP SHSVYQRVQM QGDRHYSLSA WLQVSSSNGT TSSAHVRAII KSPNGERVIA GAIDAKSGCW SMLKGGMTSD SSGHAEIYFE SHAAVDIWVD
201: SVSLQPFTFD EWDAHARRSA AKSRRRTVKV VVAMGAADGK PIAHANVSIE LLRMGFPFGN AATKEITELP AYEKWFTSRF TVATFENEMK WYSTEWTQNH
301: EDYGVADKML SLMQRHGIKV RGHNVFWDDQ NSQMKWVMPL SLAQLKAAIQ KRLKSVVSRY AGKVIHWDVV NENLHFNFFE TKLGPGASAQ IFQQVGQLDR
401: NPILFMNEFN TLEQPGDPNP TPAKYVAKMT QIRSYPGNGG LKLGVGLESH FSTPNIPYMR SSLDTLAKLK LPMWLTEVDV VKGPNQVKNL EQVLREGYGH
501: PGVNGIVMWA AWHAKGCYVM CLTDNSFKNL PVGDVVDKLI AEWKTHRASA TTDRDGAVEL DLPLGEYKFT VRHPSLKAAA VQTVTVDDTS SSASEFTINV
601: KS
101: AVASSGKLLP SHSVYQRVQM QGDRHYSLSA WLQVSSSNGT TSSAHVRAII KSPNGERVIA GAIDAKSGCW SMLKGGMTSD SSGHAEIYFE SHAAVDIWVD
201: SVSLQPFTFD EWDAHARRSA AKSRRRTVKV VVAMGAADGK PIAHANVSIE LLRMGFPFGN AATKEITELP AYEKWFTSRF TVATFENEMK WYSTEWTQNH
301: EDYGVADKML SLMQRHGIKV RGHNVFWDDQ NSQMKWVMPL SLAQLKAAIQ KRLKSVVSRY AGKVIHWDVV NENLHFNFFE TKLGPGASAQ IFQQVGQLDR
401: NPILFMNEFN TLEQPGDPNP TPAKYVAKMT QIRSYPGNGG LKLGVGLESH FSTPNIPYMR SSLDTLAKLK LPMWLTEVDV VKGPNQVKNL EQVLREGYGH
501: PGVNGIVMWA AWHAKGCYVM CLTDNSFKNL PVGDVVDKLI AEWKTHRASA TTDRDGAVEL DLPLGEYKFT VRHPSLKAAA VQTVTVDDTS SSASEFTINV
601: KS
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.