Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39936 | Sorghum | extracellular, vacuole | 54.48 | 53.73 |
| Zm00001d028103_P001 | Maize | extracellular, vacuole | 54.66 | 53.62 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 51.85 | 53.54 |
| Os03t0201500-01 | Rice | vacuole | 53.95 | 53.48 |
| TraesCS4B01G259100.1 | Wheat | vacuole | 53.25 | 53.16 |
| Os03t0201901-00 | Rice | cytosol | 53.25 | 53.16 |
| TraesCS4D01G259500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 53.08 | 52.98 |
| EER92683 | Sorghum | vacuole | 54.31 | 52.91 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 53.25 | 52.79 |
| TraesCS4D01G259100.1 | Wheat | vacuole | 53.25 | 51.97 |
| TraesCS4B01G259400.1 | Wheat | vacuole | 52.72 | 51.46 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 52.55 | 51.29 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 53.08 | 50.76 |
| AT4G33840.1 | Thale cress | vacuole | 51.14 | 50.52 |
| Zm00001d048151_P001 | Maize | vacuole | 51.49 | 50.43 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 49.21 | 50.27 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 48.68 | 50.18 |
| AT4G33830.1 | Thale cress | vacuole | 50.79 | 50.17 |
| HORVU2Hr1G113150.1 | Barley | cytosol | 47.1 | 50.0 |
| KRH29254 | Soybean | cytosol | 49.56 | 49.82 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.09 | 49.74 |
| CDY28323 | Canola | vacuole | 48.33 | 49.37 |
| CDY69164 | Canola | vacuole | 49.56 | 49.21 |
| HORVU4Hr1G070260.12 | Barley | vacuole | 52.72 | 49.1 |
| Bra034585.1-P | Field mustard | vacuole | 49.38 | 49.04 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 49.38 | 48.78 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 78.38 | 48.69 |
| TraesCS1B01G124500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.86 | 48.43 |
| TraesCS1D01G107700.1 | Wheat | extracellular, vacuole | 48.86 | 48.43 |
| CDY48434 | Canola | vacuole | 48.68 | 48.34 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 48.68 | 48.26 |
| CDY48433 | Canola | vacuole | 48.86 | 48.01 |
| Bra034584.1-P | Field mustard | vacuole | 48.33 | 47.99 |
| CDY49378 | Canola | plasma membrane, vacuole | 47.98 | 47.73 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 47.98 | 47.56 |
| Os10t0351700-01 | Rice | plasma membrane | 48.33 | 47.33 |
| HORVU1Hr1G023120.1 | Barley | extracellular | 47.63 | 47.13 |
| TraesCS2D01G510500.1 | Wheat | vacuole | 47.45 | 47.04 |
| TraesCS2B01G537100.1 | Wheat | vacuole | 47.45 | 47.04 |
| Zm00001d030468_P001 | Maize | cytosol | 48.68 | 47.03 |
| CDY28325 | Canola | vacuole | 47.8 | 46.98 |
| KRH29253 | Soybean | extracellular, vacuole | 46.22 | 46.47 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 48.33 | 46.45 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 53.6 | 46.35 |
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 49.03 | 46.35 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 47.45 | 46.23 |
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 47.28 | 45.98 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 47.1 | 45.66 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 47.1 | 45.66 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 46.92 | 45.49 |
| Solyc01g106990.1.1 | Tomato | vacuole | 45.87 | 45.23 |
| PGSC0003DMT400037865 | Potato | cytosol | 43.76 | 43.84 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 46.4 | 43.35 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 44.46 | 43.25 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 43.06 | 42.46 |
| Bra017609.1-P | Field mustard | nucleus | 49.21 | 41.98 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 70.47 | 41.86 |
| Os10t0351600-00 | Rice | cytosol | 41.65 | 40.37 |
| EER92684 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 39.72 | 39.51 |
| Os03t0201800-01 | Rice | extracellular | 38.49 | 37.63 |
| GSMUA_Achr5P11430_001 | Banana | extracellular, vacuole | 36.91 | 36.84 |
| CDX72434 | Canola | cytosol, vacuole | 50.44 | 32.73 |
| Solyc01g106980.1.1 | Tomato | cytosol | 46.22 | 23.82 |
| GSMUA_Achr6P30170_001 | Banana | cytosol | 24.96 | 20.49 |
| GSMUA_Achr9P09810_001 | Banana | cytosol | 25.13 | 20.43 |
| GSMUA_Achr1P24570_001 | Banana | cytosol | 26.54 | 12.74 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:CenC_carb-bd | InterPro:GH10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0016798 | EnsemblPlantsGene:GSMUA_Achr1G12500_001 | EnsemblPlants:GSMUA_Achr1P12500_001 | EnsemblPlants:GSMUA_Achr1T12500_001 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF |
| InterPro:IPR001000 | InterPro:IPR008979 | UniProt:M0RZA8 | PFAM:PF00331 | PFAM:PF02018 | PFscan:PS51760 |
| PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 | SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM |
| UniParc:UPI000295F262 | SEG:seg | : | : | : | : |
Description
Putative Endo-1,4-beta-xylanase C [Source:GMGC_GENE;Acc:GSMUA_Achr1G12500_001]
Coordinates
chr1:+:9580760..9582930
Molecular Weight (calculated)
63825.4 Da
IEP (calculated)
7.203
GRAVY (calculated)
-0.316
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MRILTLFLYR LLKKLLLFSL SFNANLFVSL SRPCLAEPQR PQYGGGIVRN PEFNDGLKGW SVFGYGKLAE RTSDTGNRFL ATDGRSLSHQ SMSQKIYLQR
101: GMLYTFSAWL QVDQGNTTVT AIFKTAKDGF VHVGAVEARS GCWSMLKGGL TAKSSGPAEF YFECENTSVE IWVDSVSLQP FTEDQWRAHQ AESISKVRKK
201: TVAIQAVDAN GRALPGASVS VQQKRPGFPF GCAIANTILE NSAYQSWFTS RFTVTTFENE MKWYANEREQ GKETYTDADA MVAFAKQHGI AVRGHNVVWN
301: DPQDVQNWVK SLPTQQIGEA VNRRFNSVMP RYRGKVIAWD VVNENVHFSY FESQLGQNAS SVFYQQAHQL DPNALMFLND YNTLEAPVDG NVTPDKFLQK
401: LWQIQSFGNL SRMAIGLEGH FGTPDISYMR SALDKLAGAN VPIWLTEVDV GHANQSKDLE DILREAYSHP AVQGIVMWGA WHPQGCWRMC LTDNNFKNLP
501: TGDVVDKLIF EWKSDNLAAT TDVEGLHRAE LFHGEYKITI NHPSSNSSSM RSLTVDSASQ NNSVLRVIV
101: GMLYTFSAWL QVDQGNTTVT AIFKTAKDGF VHVGAVEARS GCWSMLKGGL TAKSSGPAEF YFECENTSVE IWVDSVSLQP FTEDQWRAHQ AESISKVRKK
201: TVAIQAVDAN GRALPGASVS VQQKRPGFPF GCAIANTILE NSAYQSWFTS RFTVTTFENE MKWYANEREQ GKETYTDADA MVAFAKQHGI AVRGHNVVWN
301: DPQDVQNWVK SLPTQQIGEA VNRRFNSVMP RYRGKVIAWD VVNENVHFSY FESQLGQNAS SVFYQQAHQL DPNALMFLND YNTLEAPVDG NVTPDKFLQK
401: LWQIQSFGNL SRMAIGLEGH FGTPDISYMR SALDKLAGAN VPIWLTEVDV GHANQSKDLE DILREAYSHP AVQGIVMWGA WHPQGCWRMC LTDNNFKNLP
501: TGDVVDKLIF EWKSDNLAAT TDVEGLHRAE LFHGEYKITI NHPSSNSSSM RSLTVDSASQ NNSVLRVIV
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.