Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 100.0 | 100.0 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 96.42 | 96.42 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 90.12 | 89.36 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 85.52 | 82.43 |
| Os10t0351700-01 | Rice | plasma membrane | 75.13 | 75.9 |
| Zm00001d030468_P001 | Maize | cytosol | 72.74 | 72.5 |
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 73.08 | 71.26 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 61.33 | 62.72 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 50.94 | 52.09 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 50.77 | 51.11 |
| KRH29254 | Soybean | cytosol | 46.34 | 48.06 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 45.66 | 47.1 |
| AT4G33830.1 | Thale cress | vacuole | 46.17 | 47.05 |
| CDY28323 | Canola | vacuole | 44.63 | 47.04 |
| Bra034585.1-P | Field mustard | vacuole | 45.83 | 46.95 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.66 | 46.77 |
| AT4G33840.1 | Thale cress | vacuole | 45.83 | 46.7 |
| CDY69164 | Canola | vacuole | 45.49 | 46.6 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 43.61 | 46.46 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 45.49 | 46.35 |
| CDY48434 | Canola | vacuole | 44.97 | 46.07 |
| Bra034584.1-P | Field mustard | vacuole | 44.63 | 45.72 |
| KRH29253 | Soybean | extracellular, vacuole | 42.76 | 44.35 |
| CDY49378 | Canola | plasma membrane, vacuole | 43.1 | 44.23 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 42.93 | 43.9 |
| CDY48433 | Canola | vacuole | 43.27 | 43.87 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 41.57 | 43.81 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 44.29 | 43.7 |
| CDY28325 | Canola | vacuole | 43.1 | 43.7 |
| Solyc01g106990.1.1 | Tomato | vacuole | 42.42 | 43.15 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 40.37 | 42.93 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 40.72 | 40.85 |
| PGSC0003DMT400037865 | Potato | cytosol | 38.84 | 40.14 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 38.84 | 39.51 |
| Bra017609.1-P | Field mustard | nucleus | 44.12 | 38.83 |
| TraesCS4A01G071100.2 | Wheat | vacuole | 35.26 | 36.9 |
| TraesCS2A01G061600.1 | Wheat | extracellular, plasma membrane, vacuole | 32.88 | 34.71 |
| CDX72434 | Canola | cytosol, vacuole | 44.8 | 29.99 |
| TraesCS5A01G441700.1 | Wheat | cytosol | 27.26 | 29.25 |
| TraesCS5A01G441600.1 | Wheat | cytosol | 27.09 | 28.96 |
| TraesCS5A01G441400.1 | Wheat | cytosol | 26.24 | 27.8 |
| TraesCS3A01G038200.1 | Wheat | cytosol | 25.38 | 26.23 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 40.55 | 25.98 |
| TraesCS3A01G038000.1 | Wheat | cytosol | 25.55 | 24.35 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 39.69 | 24.32 |
| Solyc01g106980.1.1 | Tomato | cytosol | 40.89 | 21.74 |
| TraesCS4A01G292300.1 | Wheat | cytosol | 26.92 | 21.44 |
| TraesCS2A01G122200.1 | Wheat | mitochondrion | 25.55 | 13.64 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | PFAM:PF00331 | PFscan:PS51257 | PFscan:PS51760 |
| PANTHER:PTHR31490 | PANTHER:PTHR31490:SF8 | SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:TraesCS5A01G196600 | EnsemblPlants:TraesCS5A01G196600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:-:400493675..400495987
Molecular Weight (calculated)
65000.8 Da
IEP (calculated)
8.422
GRAVY (calculated)
-0.242
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNFVEKLVL SLLWISLLQG CIVQSVEYDH TASIECLGDP MKPLYKGGII QNGEFNNGLM GWSTRRDIKA GVRKSASGNK FAVVQGASSS PLGTGAVAAS
101: PSHSVYQKIQ MKGDTHYSLS AWLRVSAGTA HVRAVVKAPN GENITAGAID AQSGCWTMLK GGMTARAYHY GQGEVFFESD APVDIWVDSV SLQPFSFEEW
201: NAHARQSANK ARRSTVKIVA RGPDGQPMAN ANVSIQQLRA GFPFGNAMTK EILGNPAYEK WFFSRFTVAT MENEMKWYGT EWVQNQEDYR TPDAMLALAQ
301: KYGVKVRGHN VFWDDQSSQL KWVMPMNLNQ LKAAMQKRLK NVVSRYAGKL IHWDVVNENL HFNFFETKLG PSASPMIYQQ VGQIDHTAVL FMNEFNTLEQ
401: PMDPNGTPTK YVAKMKLIQG YPGNAGFKFG VGLESHFTTP NLPYVRGALD TLAQLKLPMW MTEVDVVKGP NQVKFLEQVL REAYGHPGVQ GIVMWAAWHP
501: YGCYVMCLTD NSFKNLPVGD LVDKLIAEWK THKTSAATDA NGMLELDLAH GDYKLTVDHP SQTTAVSHTM TVDAGSAASE HIISVKL
101: PSHSVYQKIQ MKGDTHYSLS AWLRVSAGTA HVRAVVKAPN GENITAGAID AQSGCWTMLK GGMTARAYHY GQGEVFFESD APVDIWVDSV SLQPFSFEEW
201: NAHARQSANK ARRSTVKIVA RGPDGQPMAN ANVSIQQLRA GFPFGNAMTK EILGNPAYEK WFFSRFTVAT MENEMKWYGT EWVQNQEDYR TPDAMLALAQ
301: KYGVKVRGHN VFWDDQSSQL KWVMPMNLNQ LKAAMQKRLK NVVSRYAGKL IHWDVVNENL HFNFFETKLG PSASPMIYQQ VGQIDHTAVL FMNEFNTLEQ
401: PMDPNGTPTK YVAKMKLIQG YPGNAGFKFG VGLESHFTTP NLPYVRGALD TLAQLKLPMW MTEVDVVKGP NQVKFLEQVL REAYGHPGVQ GIVMWAAWHP
501: YGCYVMCLTD NSFKNLPVGD LVDKLIAEWK THKTSAATDA NGMLELDLAH GDYKLTVDHP SQTTAVSHTM TVDAGSAASE HIISVKL
001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
Arabidopsis Description
1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.