Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole
Predictor Summary:
Predictor Summary:
- vacuole 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 92.28 | 96.07 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 89.98 | 93.84 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 82.43 | 85.52 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 82.43 | 85.52 |
| Os10t0351700-01 | Rice | plasma membrane | 72.58 | 76.08 |
| Zm00001d030468_P001 | Maize | cytosol | 71.1 | 73.51 |
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 72.58 | 73.42 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 59.61 | 63.24 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 48.93 | 51.11 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.11 | 51.05 |
| KRH29254 | Soybean | cytosol | 43.68 | 47.0 |
| AT4G33830.1 | Thale cress | vacuole | 44.01 | 46.53 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 43.35 | 46.4 |
| Bra034585.1-P | Field mustard | vacuole | 43.02 | 45.72 |
| AT4G33840.1 | Thale cress | vacuole | 43.19 | 45.66 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 42.86 | 45.55 |
| CDY28323 | Canola | vacuole | 41.54 | 45.42 |
| CDY69164 | Canola | vacuole | 42.69 | 45.38 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 40.72 | 45.01 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 42.36 | 44.79 |
| CDY48434 | Canola | vacuole | 42.04 | 44.68 |
| Bra034584.1-P | Field mustard | vacuole | 41.71 | 44.33 |
| KRH29253 | Soybean | extracellular, vacuole | 40.56 | 43.64 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 39.9 | 43.63 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 41.05 | 43.55 |
| CDY48433 | Canola | vacuole | 41.38 | 43.52 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 42.36 | 43.36 |
| CDY28325 | Canola | vacuole | 41.22 | 43.35 |
| CDY49378 | Canola | plasma membrane, vacuole | 40.07 | 42.66 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 38.1 | 42.03 |
| Solyc01g106990.1.1 | Tomato | vacuole | 39.08 | 41.25 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 38.59 | 40.17 |
| PGSC0003DMT400037865 | Potato | cytosol | 36.95 | 39.61 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 37.27 | 39.34 |
| Bra017609.1-P | Field mustard | nucleus | 41.05 | 37.48 |
| TraesCS4A01G071100.2 | Wheat | vacuole | 33.5 | 36.36 |
| TraesCS2A01G061600.1 | Wheat | extracellular, plasma membrane, vacuole | 32.02 | 35.07 |
| TraesCS5A01G441700.1 | Wheat | cytosol | 25.94 | 28.88 |
| CDX72434 | Canola | cytosol, vacuole | 41.54 | 28.85 |
| TraesCS5A01G441600.1 | Wheat | cytosol | 25.62 | 28.42 |
| TraesCS5A01G441400.1 | Wheat | cytosol | 24.96 | 27.44 |
| TraesCS3A01G038200.1 | Wheat | cytosol | 24.79 | 26.58 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 39.08 | 25.98 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 37.6 | 23.9 |
| TraesCS3A01G038000.1 | Wheat | cytosol | 24.14 | 23.86 |
| TraesCS4A01G292300.1 | Wheat | cytosol | 26.6 | 21.98 |
| Solyc01g106980.1.1 | Tomato | cytosol | 38.59 | 21.29 |
| TraesCS2A01G122200.1 | Wheat | mitochondrion | 25.62 | 14.18 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | PFAM:PF00331 | PFscan:PS51760 | PANTHER:PTHR31490 |
| PANTHER:PTHR31490:SF8 | SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | EnsemblPlantsGene:TraesCS2A01G584800 | EnsemblPlants:TraesCS2A01G584800.1 |
Description
No Description!
Coordinates
chr2A:-:776021786..776024545
Molecular Weight (calculated)
67469.5 Da
IEP (calculated)
7.958
GRAVY (calculated)
-0.271
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLHRSGLS PTHLVGTSNC KERVAMRDFV EKLALSLLWI SLFQGCTVQS VEYDHTASIE CLRDPMKPLY KGGIIQNSEF NNGLMGWSTY RNIKAGVGKS
101: ASGNRFAVVQ GAISSLFGAG DAAASQSHSV YQKVQMQGDT HYSLSAWLQV SAGTAHVRAV VKAPNGENIT AGGIDAQSGC WTMLKGGMTA HTYHSGQGEV
201: FFQSDTPVDI WVDSVSLQPF SFDEWDAHAR RSADKARRSM VKVVARGPDG QPMANTNVSI QLLRTGFPFG NTMTKEIISN PAYEKWFFSR FTVATMENEM
301: KWYSTEWNQN QEDYKIPDDM LKMAQKYGVK VRGHNVFWDD QNSQIKWVRP MGVDQLKAAM QKRLKSVVSR YAGKVIHWDV LNENLHFNFF ETKLGPNASP
401: MIYQQVGQID HNAILFMNEF NTLEQPMDPN GTPTKYIAKM KLIQGYPGNG GLKLGVGLES HFSTPNIPYV RGALDTLAQL KLPMWMTEVD VVKGPNQVKY
501: LEQVLREGYA HPGVQGIVMW AAWHANGCYV MCLTDNSFKN LPVGALVDKL IAEWKTHATS ATTDANGLVE LDLAHGDYKL TVNHPSSLAA SHTITVDAAS
601: SEHTISLKV
101: ASGNRFAVVQ GAISSLFGAG DAAASQSHSV YQKVQMQGDT HYSLSAWLQV SAGTAHVRAV VKAPNGENIT AGGIDAQSGC WTMLKGGMTA HTYHSGQGEV
201: FFQSDTPVDI WVDSVSLQPF SFDEWDAHAR RSADKARRSM VKVVARGPDG QPMANTNVSI QLLRTGFPFG NTMTKEIISN PAYEKWFFSR FTVATMENEM
301: KWYSTEWNQN QEDYKIPDDM LKMAQKYGVK VRGHNVFWDD QNSQIKWVRP MGVDQLKAAM QKRLKSVVSR YAGKVIHWDV LNENLHFNFF ETKLGPNASP
401: MIYQQVGQID HNAILFMNEF NTLEQPMDPN GTPTKYIAKM KLIQGYPGNG GLKLGVGLES HFSTPNIPYV RGALDTLAQL KLPMWMTEVD VVKGPNQVKY
501: LEQVLREGYA HPGVQGIVMW AAWHANGCYV MCLTDNSFKN LPVGALVDKL IAEWKTHATS ATTDANGLVE LDLAHGDYKL TVNHPSSLAA SHTITVDAAS
601: SEHTISLKV
001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
Arabidopsis Description
1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.