Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G259500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 98.26 | 98.95 |
| TraesCS4B01G259100.1 | Wheat | vacuole | 97.74 | 98.42 |
| Os03t0201500-01 | Rice | vacuole | 77.53 | 77.53 |
| KXG39936 | Sorghum | extracellular, vacuole | 76.48 | 76.08 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 77.35 | 67.48 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 64.63 | 63.64 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 52.79 | 53.25 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 51.22 | 51.22 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 52.09 | 50.94 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 52.09 | 50.94 |
| KRH29254 | Soybean | cytosol | 50.0 | 50.71 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 48.26 | 49.73 |
| AT4G33840.1 | Thale cress | vacuole | 49.65 | 49.48 |
| CDY69164 | Canola | vacuole | 49.13 | 49.21 |
| CDY48434 | Canola | vacuole | 49.13 | 49.21 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.13 | 49.21 |
| CDY28323 | Canola | vacuole | 47.74 | 49.19 |
| AT4G33830.1 | Thale cress | vacuole | 49.3 | 49.13 |
| Bra034584.1-P | Field mustard | vacuole | 48.95 | 49.04 |
| Bra034585.1-P | Field mustard | vacuole | 48.95 | 49.04 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 48.78 | 48.61 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 51.05 | 48.11 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 46.17 | 48.01 |
| KRH29253 | Soybean | extracellular, vacuole | 47.21 | 47.88 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 45.82 | 47.73 |
| CDY49378 | Canola | plasma membrane, vacuole | 47.39 | 47.55 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 49.13 | 47.4 |
| CDY48433 | Canola | vacuole | 45.82 | 45.42 |
| CDY28325 | Canola | vacuole | 45.82 | 45.42 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 45.3 | 45.3 |
| Solyc01g106990.1.1 | Tomato | vacuole | 44.08 | 43.85 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 43.55 | 42.73 |
| PGSC0003DMT400037865 | Potato | cytosol | 41.99 | 42.43 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 41.99 | 41.77 |
| Bra017609.1-P | Field mustard | nucleus | 48.08 | 41.38 |
| TraesCS2A01G061600.1 | Wheat | extracellular, plasma membrane, vacuole | 37.11 | 38.31 |
| TraesCS4A01G071100.2 | Wheat | vacuole | 37.11 | 37.97 |
| CDX72434 | Canola | cytosol, vacuole | 48.95 | 32.04 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 48.08 | 30.13 |
| TraesCS5A01G441600.1 | Wheat | cytosol | 27.18 | 28.42 |
| TraesCS5A01G441400.1 | Wheat | cytosol | 27.18 | 28.16 |
| TraesCS3A01G038200.1 | Wheat | cytosol | 27.7 | 27.99 |
| TraesCS5A01G441700.1 | Wheat | cytosol | 26.66 | 27.97 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 45.82 | 27.45 |
| TraesCS3A01G038000.1 | Wheat | cytosol | 27.53 | 25.65 |
| TraesCS4A01G292300.1 | Wheat | cytosol | 29.97 | 23.34 |
| Solyc01g106980.1.1 | Tomato | cytosol | 43.55 | 22.64 |
| TraesCS2A01G122200.1 | Wheat | mitochondrion | 29.62 | 15.45 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:2.60.40.1120 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:Carb-bd-like_fold | InterPro:CenC_carb-bd |
| InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030246 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | PFAM:PF00331 | PFAM:PF02018 | PFscan:PS51760 |
| PANTHER:PTHR31490 | PANTHER:PTHR31490:SF13 | SMART:SM00633 | SUPFAM:SSF49452 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS4A01G045500 | EnsemblPlants:TraesCS4A01G045500.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:37315823..37318714
Molecular Weight (calculated)
63072.2 Da
IEP (calculated)
5.863
GRAVY (calculated)
-0.196
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTMEKLVF LLLWAAALME GSMVKSLPYD SSASVECLVE PMEPHYGGGL IVNPDFSAGL RGWSAFGYGS VAEGASVATG NRYAVAGNRT RPYHSVSQKV
101: YLQNDTHYTL SAWLQVSHGA AADVWAVVKT ADDFVHVGGA VAKPGCWSML KGGFTAANAG RAEIYFESNA TVDIWVDSVS LKPFSKEEWA AHRTESTRAV
201: RRKMVRLQAK DSGGNPLQGA EVSVENVRSS FPLGAAMSRE ILTNPGYQQW FTSRFTVTTF ENEMKWYSTE PAPGREDYTV PDAMLALAKQ HGIGVRGHNV
301: FWDDPKQQPR WVQSLPYPEL LAAASRRIRS FVSRYAGQVI AWDVVNENLH YSFFERQFGW DASTAFYAAA RLLDAGSALM FMNDYNTLEQ PGDMAAAPGR
401: YVDRLRQIIA SYPENGAGMA IGLEGHFTTP NIPYMRAALD SLAQIGLPVW LTEVDVAGGP SQAQHLEEVL REAYAHPAVQ GVILWSAWRP QGCYVMCLTD
501: NNFRNLPQGD VVDRLLAEWR TAAQTGTTDE QGYFQAEVAH GDYKVTVSHP SLNTSVSQSV TVDLGSGNHF FIQA
101: YLQNDTHYTL SAWLQVSHGA AADVWAVVKT ADDFVHVGGA VAKPGCWSML KGGFTAANAG RAEIYFESNA TVDIWVDSVS LKPFSKEEWA AHRTESTRAV
201: RRKMVRLQAK DSGGNPLQGA EVSVENVRSS FPLGAAMSRE ILTNPGYQQW FTSRFTVTTF ENEMKWYSTE PAPGREDYTV PDAMLALAKQ HGIGVRGHNV
301: FWDDPKQQPR WVQSLPYPEL LAAASRRIRS FVSRYAGQVI AWDVVNENLH YSFFERQFGW DASTAFYAAA RLLDAGSALM FMNDYNTLEQ PGDMAAAPGR
401: YVDRLRQIIA SYPENGAGMA IGLEGHFTTP NIPYMRAALD SLAQIGLPVW LTEVDVAGGP SQAQHLEEVL REAYAHPAVQ GVILWSAWRP QGCYVMCLTD
501: NNFRNLPQGD VVDRLLAEWR TAAQTGTTDE QGYFQAEVAH GDYKVTVSHP SLNTSVSQSV TVDLGSGNHF FIQA
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.