Factsheet for GSMUA_Achr1P12520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	48.69	78.38
Os03t0201901-00	Rice	cytosol	30.79	49.47
EER92683	Sorghum	vacuole	31.11	48.8
Zm00001d028103_P001	Maize	extracellular, vacuole	30.9	48.79
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	29.26	48.64
KXG39936	Sorghum	extracellular, vacuole	30.57	48.53
TraesCS4B01G259100.1	Wheat	vacuole	30.13	48.42
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	30.02	48.25
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	30.13	48.08
CDY28323	Canola	vacuole	29.04	47.76
AT4G33830.1	Thale cress	vacuole	30.02	47.74
TraesCS4D01G259100.1	Wheat	vacuole	30.35	47.68
TraesCS4B01G259400.1	Wheat	vacuole	30.24	47.51
TraesCS4A01G045800.1	Wheat	vacuole	30.02	47.17
Os03t0201500-01	Rice	vacuole	29.48	47.04
HORVU2Hr1G113150.1	Barley	cytosol	27.29	46.64
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	29.15	46.6
AT4G33840.1	Thale cress	vacuole	29.26	46.53
Zm00001d048151_P001	Maize	vacuole	29.48	46.47
CDY69164	Canola	vacuole	29.04	46.42
Bra034585.1-P	Field mustard	vacuole	28.93	46.25
AT4G33860.1	Thale cress	plasma membrane, vacuole	29.04	46.18
VIT_03s0091g00880.t01	Wine grape	vacuole	29.69	45.71
VIT_03s0091g00950.t01	Wine grape	cytosol	27.51	45.65
KRH29254	Soybean	cytosol	28.17	45.58
CDY48434	Canola	vacuole	28.49	45.55
VIT_03s0091g00900.t01	Wine grape	cytosol	27.51	45.24
Bra034584.1-P	Field mustard	vacuole	28.28	45.2
HORVU4Hr1G070260.12	Barley	vacuole	30.13	45.17
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	28.17	44.95
CDY49378	Canola	plasma membrane, vacuole	28.06	44.93
CDY48433	Canola	vacuole	28.28	44.73
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	27.84	44.43
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	27.73	44.25
CDY28325	Canola	vacuole	27.95	44.21
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	27.4	43.73
Os10t0351700-01	Rice	plasma membrane	27.4	43.2
HORVU1Hr1G023120.1	Barley	extracellular	26.97	42.96
TraesCS2B01G537100.1	Wheat	vacuole	26.64	42.51
KRH29253	Soybean	extracellular, vacuole	26.2	42.4
TraesCS2D01G510500.1	Wheat	vacuole	26.53	42.33
GSMUA_Achr1P12510_001	Banana	cytosol	43.89	41.96
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	30.13	41.95
Zm00001d030468_P001	Maize	cytosol	26.97	41.94
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	27.51	41.86
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	26.64	41.78
TraesCSU01G021800.1	Wheat	extracellular, vacuole	26.53	41.54
Os10t0351600-00	Rice	cytosol	26.09	40.72
HORVU5Hr1G056740.1	Barley	vacuole	26.31	40.71
TraesCS5A01G196600.1	Wheat	plasma membrane, vacuole	25.98	40.55
TraesCS5A01G196500.1	Wheat	plasma membrane, vacuole	25.98	40.55
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	25.76	40.2
PGSC0003DMT400037865	Potato	cytosol	24.56	39.61
Bra017609.1-P	Field mustard	nucleus	28.82	39.58
Solyc01g106980.1.1	Tomato	cytosol	47.6	39.49
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	25.22	39.49
Solyc01g106990.1.1	Tomato	vacuole	24.78	39.34
TraesCS2A01G584800.1	Wheat	plastid, vacuole	25.98	39.08
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	24.02	38.46
Solyc05g051260.2.1	Tomato	golgi, vacuole	24.02	38.13
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	22.38	35.96
Os03t0201800-01	Rice	extracellular	22.71	35.74
CDX72434	Canola	cytosol, vacuole	29.04	30.33
GSMUA_Achr6P30170_001	Banana	cytosol	13.54	17.89
GSMUA_Achr9P09810_001	Banana	cytosol	13.32	17.43
GSMUA_Achr1P24570_001	Banana	cytosol	14.63	11.31

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr1G12520_001	EnsemblPlants:GSMUA_Achr1P12520_001	EnsemblPlants:GSMUA_Achr1T12520_001	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF
InterPro:IPR001000	InterPro:IPR008979	UniProt:M0RZB0	PFAM:PF00331	PFAM:PF02018	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF2	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0002965A4A
SEG:seg	:	:	:	:	:

Description

Putative Endo-1,4-beta-xylanase C [Source:GMGC_GENE;Acc:GSMUA_Achr1G12520_001]

Coordinates

chr1:+:9609719..9617370

Molecular Weight (calculated)

102980.0 Da

IEP (calculated)

7.004

GRAVY (calculated)

-0.381

Length

916 amino acids

Sequence
(BLAST)

001: MFLATERRRL SHQSVSQKVY LQRGMLYTFS AWLQVDQGNT TVTAIFKTAK DGFVHVGAVE ARSGCWSMLK GGLTAKSFGP AEFYFESNNT SVEIWVDSVS
101: LQPFTEDQWR AHQEESINKV RKKTVAVQAV DANGHALPGA SVTIKQKRSG FPLGCAIANT ILENKAYQTW FTSRFTVTTF ENEMKWYANE REQGKETYTD
201: ADAMVAFAKQ HGIAVRGHNV VWNDPQDVQS WVKSLPTQQL GEAVNRRFNS VMPRYRGKVI AWDVVNENVH FSYFESQLGQ NASSIFYQQA HQLDPHALMF
301: LNDFNTLEVP VDGNVTPEKY LQKLRQIQSF GNLSRMAIGL EGHFGRPDIS YMRSALDKLA GANVPIWLTE VDVAHSNQTK YLEDILREAY SHPAVQGIVM
401: WGAWHPQGCW RMCLTDNNFK NLPTGDVVDK LIFEWRSDNV TATTDADGLL RAELFHGEYE ITINHPSSNS SSMLSLTVDS ASQNNNVLRC LAEPPRPQYG
501: GGIVRNPEFN DGFKGWSVFG YGQIAERTSD TGNRFLATDR RSLSHQSMSQ KVYLQRGMLY TFSAWLQVDQ GNATVTAIFK TGKDGFVHVG AVEARSGCWS
601: MLKGGLTAKS SDPAEFYFES KDTSVEIWVD SVSLQPFTED QWRAHQAESI NKVRKKTVAI LAVDANGHAL PGASVSIQQT RSGFPLGCAL KSTILQSSAY
701: QSWFTARFTV TTFTNEMKWY SNEPVEGNET YADADAMLAF AKQHGIAVRG HNVVWDDRQY VQNWVQSLPT QKLREAVNRR FNNVMTRYRG QVIAWDVVNE
801: NVHFSYFESR LGENASSIFY QQAHQLDPHA LMFLNEFNTL EVPVDGKSTP AKYLQKLQQI QSFGNLSRMA IGLEGHFGTP DISYMRSALD KLAGANVPIW
901: LTEVDVAHSN EPCRGL

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.