CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 3
vacuole 5
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028103_P001	Maize	extracellular, vacuole	93.15	93.79
Zm00001d048151_P001	Maize	vacuole	85.79	86.23
Os03t0201901-00	Rice	cytosol	75.86	77.72
TraesCS4D01G259100.1	Wheat	vacuole	73.12	73.24
TraesCS4B01G259400.1	Wheat	vacuole	72.95	73.07
TraesCS4A01G045800.1	Wheat	vacuole	72.26	72.38
HORVU4Hr1G070260.12	Barley	vacuole	73.8	70.54
KXG39936	Sorghum	extracellular, vacuole	64.9	65.68
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	52.91	54.31
KRH29254	Soybean	cytosol	50.68	52.3
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	50.68	51.66
CDY69164	Canola	vacuole	50.68	51.66
AT4G33840.1	Thale cress	vacuole	50.86	51.56
Bra034585.1-P	Field mustard	vacuole	50.17	51.13
AT4G33830.1	Thale cress	vacuole	50.17	50.87
AT4G33860.1	Thale cress	plasma membrane, vacuole	50.17	50.87
VIT_03s0091g00900.t01	Wine grape	cytosol	48.46	50.81
CDY28323	Canola	vacuole	48.46	50.81
CDY48434	Canola	vacuole	49.66	50.61
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	52.05	50.5
Bra034584.1-P	Field mustard	vacuole	49.14	50.09
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	47.09	49.91
VIT_03s0091g00880.t01	Wine grape	vacuole	50.68	49.75
VIT_03s0091g00950.t01	Wine grape	cytosol	46.92	49.64
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	48.46	49.3
CDY48433	Canola	vacuole	48.63	49.05
CDY49378	Canola	plasma membrane, vacuole	47.95	48.95
CDY28325	Canola	vacuole	48.46	48.88
KRH29253	Soybean	extracellular, vacuole	47.09	48.59
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	44.52	45.45
Solyc01g106990.1.1	Tomato	vacuole	44.18	44.71
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	43.84	43.76
Bra017609.1-P	Field mustard	nucleus	48.97	42.88
PGSC0003DMT400037865	Potato	cytosol	41.44	42.61
Solyc05g051260.2.1	Tomato	golgi, vacuole	40.92	41.42
EER95184	Sorghum	vacuole	37.33	38.93
EES10525	Sorghum	plasma membrane, vacuole	35.27	35.89
CDX72434	Canola	cytosol, vacuole	50.51	33.64
GSMUA_Achr1P12520_001	Banana	mitochondrion	48.8	31.11
GSMUA_Achr1P12510_001	Banana	cytosol	47.6	29.02
EES00361	Sorghum	cytosol	26.37	27.3
EES00362	Sorghum	cytosol	25.0	24.58
Solyc01g106980.1.1	Tomato	cytosol	44.18	23.37
EER93683	Sorghum	cytosol	29.11	22.73
KXG30265	Sorghum	plastid	24.14	22.03
EER96324	Sorghum	mitochondrion	29.97	15.94

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	EntrezGene:8081872	UniProt:C5WTT4	InterPro:CenC_carb-bd
EnsemblPlants:EER92683	ProteinID:EER92683	ProteinID:EER92683.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331	PFAM:PF02018
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF13	MetaCyc:PWY-6784	SMART:SM00633	EnsemblPlantsGene:SORBI_3001G466000
SUPFAM:SSF49785	SUPFAM:SSF51445	unigene:Sbi.8134	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A828E7
RefSeq:XP_002465685.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:73968592..73973515

Molecular Weight (calculated)

64940.2 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.340

Length

584 amino acids

Sequence
(BLAST)

001: MEERGVAAMG RAQAFLFLSL LWVAMLSAAP RVVQSLPYDY SSSSECLPEP LEPQYGGGIL RNANFSAGLQ GWSSFGYGAV EEGLSESGNS YGVARNRTRP
101: YQSVSQKVFL QNDTHYTLSA WLQVSNGSAD IRAVVKTNGE FIHAGGVEAR SGCWSILKGG LTAPASGAAE LYFESNTTTV DIWVDNVSLQ PFSREEWAAH
201: HHAAIKSARK KTVRLRARDS SGKPVPGAQV RIEHVRSGFP LGSAMSAEIL QSPAYQRWFT SRFTVTTFEN EMKWYSTERV QGREDYSVPD AMLRFAKSHG
301: VAVRGHNVFW DQPSQQPSWV RSLSYQQLQQ ATARRIKSVM SRYAGQVIAW DVVNENLHFN YFEGKFGWDA SAEFYRKAHQ LDAQALMSMN EYNTLEWPGD
401: PMAGPSKYLG KLFQIKKFPG NANDARMAIG LEGHFSVPSI PYIRAALDTM SKANAPIWLT EIDVAPGPNQ AHYLEQILRE VYAHPAVHGI ILWTARHPQG
501: CYVMCLTDSN FRNLPTGDVV DKLIAEWKTH SHAGVADADG YYEAELFHGD YKVTVSHPVA NSTVVQSLSV DRETDTDSEY TIHV

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.