CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039946_P001	Maize	cytosol	66.67	90.17
Os01t0134900-01	Rice	extracellular	85.64	86.71
TraesCS3D01G041700.1	Wheat	cytosol	80.32	80.32
TraesCS3A01G038200.1	Wheat	cytosol	79.79	79.23
TraesCS3B01G045600.1	Wheat	mitochondrion	79.43	68.92
HORVU3Hr1G007460.1	Barley	cytosol	79.79	66.77
KXG30265	Sorghum	plastid	65.6	57.81
EES00362	Sorghum	cytosol	59.57	56.57
EER93683	Sorghum	cytosol	50.53	38.1
EER95184	Sorghum	vacuole	30.14	30.36
EES10525	Sorghum	plasma membrane, vacuole	28.37	27.87
EER96324	Sorghum	mitochondrion	51.6	26.5
EER92683	Sorghum	vacuole	27.3	26.37
KXG39936	Sorghum	extracellular, vacuole	26.95	26.34
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	26.95	25.25
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	22.7	22.38

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EntrezGene:8061351	UniProt:C5XQS8	InterPro:CenC_carb-bd
EnsemblPlants:EES00361	ProteinID:EES00361	ProteinID:EES00361.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331	PFAM:PF02018
PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF14	MetaCyc:PWY-6784	SMART:SM00633
EnsemblPlantsGene:SORBI_3003G082700	SUPFAM:SSF49785	SUPFAM:SSF51445	unigene:Sbi.8735	UniParc:UPI0001A84790	RefSeq:XP_002455241.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:7088406..7091241

Molecular Weight (calculated)

61791.9 Da

IEP (calculated)

5.026

GRAVY (calculated)

-0.227

Length

564 amino acids

Sequence
(BLAST)

001: MACTQGVLFD VNLIENSALE DGLSGWSPVG TCTALSVVEE EPAKVPTETI NDVADGYRPS GRYILASGRA DEADGLRRPI AAAALIKPRV TYRVAGWIAL
101: GGDGATAGDS HAVRVNLRLD DDDGCVVEGG AVCAEPGKWT EIKGAFRLKK SPCAAEVYVQ GAPPGVDVKV MDLQVFATDR KARFRKLRKK TDKVRKRDVV
201: LNFGSAAASG ISGASIRVMQ MDSSFPFGTC INTNVIQNPA FVDFFTKHFD WAVFENELKW YHTEAQQGQL NYADSDALLD FCDRYGKPVR GHCIFWAVEN
301: TVQQWVKSLD ADGLTAAVQE RLTSLLTRYA GRFPHYDVNN EMLHGSYYQD RLGDDINAFM FRETARLDPG ATLFVNDYNV EGGNDPNATP DKYIAQIAAL
401: QQKGAAVGGI GLQGHVTNPV GEVICDALDK LATTDLPVWL TELDVSESDV DLRAEDLEVV LREAYAHPAV EGVMFWGLMQ GHMWRQDACL INADGTVNDA
501: GERFVDLRRE WTSHARGHID SAGHFKFRGY HGTYVVQLAT ATGKVHKTFS VEKGDTPLVL DMNL

Best Arabidopsis Sequence Match ( AT1G58370.1 )
(BLAST)

001: MEVSRKDNEE PEKQNNNNVA SIIGSDRTNV IVNHDFSSGM HSWHPNCCEA FVVTAESNVS HGVLDPSKCG SYVVVKNRKE TWQGLEQDIT NRVKPCSLYK
101: VSATVAVSGP VHGLVEVMAT LKLESQQSQT NYQFIAKTCV FKEKWVRLEG MFSLPSLPEK VVFYLEGPSP GIDLLIQSVT IHRESEPELE RVTAEDETIV
201: VNPNFEDGLN NWSGRSCKIV LHDSMADGKI VPESGKVFAS ATERTQNWNG IQQEITGKVQ RKRVYEATAV VRIYGNNVTT ATVQATLWVQ NPNQRDQYIG
301: ISTVQATDKE WIHLKGKFLL NGSASRVVIY IEGPPPGTDI LLNSLTVKHA EKIPPSPPPS IENPAFGVNI LTNSHLSDDT TNGWFSLGNC TLSVAEGSPR
401: ILPPMARDSL GAHERLSGRY ILVTNRTQTW MGPAQMITDK LKLFLTYQIS VWVKVGSGIN SPQNVNVALG IDSQWVNGGQ VEINDDRWHE IGGSFRIEKN
501: PSKALVYVQG PSSGIDLMVA GLQIFPVDRL ARIKHLKRQC DKIRKRDVIL KFAGVDSSKF SGASVRVRQI RNSFPVGTCI SRSNIDNEDF VDFFLKNFNW
601: AVFANELKWY WTEPEQGKLN YQDADDMLNL CSSNNIETRG HCIFWEVQAT VQQWIQNMNQ TDLNNAVQNR LTDLLNRYKG KFKHYDVNNE MLHGSFYQDK
701: LGKDIRVNMF KTAHQLDPSA TLFVNDYHIE DGCDPKSCPE KYTEQILDLQ EKGAPVGGIG IQGHIDSPVG PIVCSALDKL GILGLPIWFT ELDVSSVNEH
801: IRADDLEVMM WEAFGHPAVE GIMLWGFWEL FMSRDNSHLV NAEGDVNEAG KRFLAVKKDW LSHANGHIDQ NGAFPFRGYS GNYAVEVITT SSSKVLKTFG
901: VDKEDSSQVI TVDLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.