Factsheet for TraesCS3D01G041700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G038200.1	Wheat	cytosol	97.87	97.18
TraesCS3B01G045600.1	Wheat	mitochondrion	96.63	83.85
Os01t0134900-01	Rice	extracellular	81.21	82.23
EES00361	Sorghum	cytosol	80.32	80.32
HORVU3Hr1G007460.1	Barley	cytosol	95.39	79.82
Zm00001d039946_P001	Maize	cytosol	58.33	78.9
TraesCS5D01G448600.1	Wheat	cytosol	63.65	65.39
TraesCS5D01G449000.1	Wheat	cytosol	63.3	64.44
TraesCS5D01G448800.1	Wheat	cytosol	60.46	62.34
TraesCS1D01G329900.1	Wheat	peroxisome	8.51	53.93
TraesCS3D01G041600.1	Wheat	extracellular, vacuole	58.33	50.93
TraesCS4D01G019500.1	Wheat	cytosol	49.29	38.24
TraesCS4D01G227700.1	Wheat	plasma membrane, vacuole	29.08	29.23
TraesCS4D01G259100.1	Wheat	vacuole	29.08	28.13
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	27.84	27.54
TraesCS2D01G510500.1	Wheat	vacuole	26.77	26.31
TraesCS2D01G124900.1	Wheat	mitochondrion	50.89	26.09
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	26.06	25.04
TraesCS2D01G060800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	27.48	25.04
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	25.35	24.91

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331
PFAM:PF02018	PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF14	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	EnsemblPlantsGene:TraesCS3D01G041700	EnsemblPlants:TraesCS3D01G041700.1	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:15975648..15977600

Molecular Weight (calculated)

61466.9 Da

IEP (calculated)

5.377

GRAVY (calculated)

-0.197

Length

564 amino acids

Sequence
(BLAST)

001: MACSCAQGVV FDANVIRNSA LEDGLAGWAP LGSCTELSVR HEEPEKVPTE TINDVEDGYR PSGRYILAAG RGGEEDGLCQ AIPAGTLKPR VTYRVAGWIG
101: LGDGAAGEHA VRVNIRVDGE GKECALVVEG GAVCAEAGKW TEIKGVFRLK ASPASGAAVH VQGAPAGVDV KVMDLQVFAT DRKARFKKLR KKTDKVRKRD
201: VVLNAGASSA VSGASIRVMQ MDTSFAFGAC INPAVIQEPA FVDYFTKHFD WAVFENELKW YHTEAVQGQL NYADPDALLD FCDRHGKPVR GHCIFWAVDR
301: MVQKWVKDLP NDQLTAAVQG RLTSLLTRYA GRFPHYDVNN EMLHGTFFQD RLGDDINAFM FKETARLDPG AALFVNDYNV EGGGDPNATP EKYIAQVNAL
401: MEKGAPVGGI GLQGHVTNPA GEIICDALDK LATTDLPVWL TELDVCESDV CLRAEDLEVV LREAYAHPAV EGVVLWGFMQ GHMWRQDACL VNSDGTINDA
501: GQRFINLRQE WTSHARGKID SDGNFKFRGY HGSYVVQLAT ATGKMHKAFS VEKGDTPLVL DMDV

Best Arabidopsis Sequence Match ( AT1G10050.1 )
(BLAST)

0001: MADLNIVMNG DFFAGIEPWY PNGCEAFVVS SDPFSSEVMS ADSSSGGYVV VTNRKETWQG LEQDITTRVA SGMNYTVSTC VGVSGPFNES AEVLSTVRLE
0101: HEDSPTEYLC IGKTYASRDK WVDLEGTFSI SNMPDRVVLY LEGPAPGKDL LIRSVTVRSS TSSDFQETEK NTDASNVFPL ALNIIKNHDF SDGLYSWNTN
0201: GCDSFVVSSN DCNLESNAVV NNRSETWQGL EQDITDNVSP GFSYKVSASV SVSGPVLGSA QVLATLKLEH KSSATEFQLI GKTYASKDIW KTLEGTFEVS
0301: GRPDRVVFFL EGPPPGIDLL VKSVTIHCES DNQFERSREF CSAPESDNHI FLNSSFSDGL NHWSGRGCNL MLHESLADGK ILPDSGTCFA SASERTHKWS
0401: GIEQDITERV QRKLIYEASS VVRLSHSHHT VQATLYVQYL DQREEYIGIS SVQGTHDDWV ELKGKFLLNG SPARAVVYIE GPPPGIDVFV DHFAVKPAEK
0501: ETPSGRPYIE SHAFGMNIVS NSHLSDGTIE GWFPLGDCHL KVGDGSPRIL PPLARDSLRK TQGYLSGRYV LATNRSGTWM GPAQTITDKV KLFVTYQVSA
0601: WVKIGSGGRT SPQDVNIALS VDGNWVNGGK VEVDDGDWHE VVGSFRIEKE AKEVMLHVQG PSPGVDLMVA GLQIFAVDRK ARLSYLRGQA DVVRKRNVCL
0701: KFSGLDPSEL SGATVKIRQT RNSFPLGSCI SRSNIDNEDF VDFFLNNFDW AVFGYELKWY WTEPEQGNFN YRDANEMIEF CERYNIKTRG HCIFWEVESA
0801: IQPWVQQLTG SKLEAAVENR VTDLLTRYNG KFRHYDVNNE MLHGSFYRDR LDSDARANMF KTAHELDPLA TLFLNEYHIE DGFDSRSSPE KYIKLVHKLQ
0901: KKGAPVGGIG IQGHITSPVG HIVRSALDKL STLGLPIWFT ELDVSSTNEH IRGDDLEVML WEAFAHPAVE GVMLWGFWEL FMSREHSHLV NADGEVNEAG
1001: KRFLEIKREW LSFVDGEIED GGGLEFRGYH GSYTVEVVTS ESKYVTNFVV DKGNSPVDVI IDL

Arabidopsis Description

glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G10050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.