Factsheet for Os01t0134900-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 18372294
extracellular: 25047395
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00361	Sorghum	cytosol	86.71	85.64
Zm00001d039946_P001	Maize	cytosol	63.55	84.89
TraesCS3D01G041700.1	Wheat	cytosol	82.23	81.21
TraesCS3A01G038200.1	Wheat	cytosol	81.87	80.28
Os05t0319900-00	Rice	cytosol, mitochondrion, plastid, vacuole	30.88	76.79
TraesCS3B01G045600.1	Wheat	mitochondrion	81.15	69.54
HORVU3Hr1G007460.1	Barley	cytosol	81.51	67.36
Os01t0134800-01	Rice	extracellular, mitochondrion, vacuole	43.27	65.49
Os03t0672900-00	Rice	extracellular	51.53	37.96
Os03t0243700-01	Rice	cytosol	27.29	37.62
Os05t0304900-01	Rice	extracellular, vacuole	28.01	31.58
Os03t0201901-00	Rice	cytosol	27.83	27.19
Os03t0201500-01	Rice	vacuole	28.01	27.18
Os07t0456700-01	Rice	plasma membrane	50.63	25.61
Os10t0351700-01	Rice	plasma membrane	26.39	25.3
Os10t0351600-00	Rice	cytosol	24.78	23.51
Os03t0201800-01	Rice	extracellular	22.98	21.99

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EntrezGene:4325690	UniProt:B9EZD5	ProteinID:BAS70254.1
InterPro:CenC_carb-bd	ProteinID:EEE53822.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979
EnsemblPlantsGene:Os01g0134900	EnsemblPlants:Os01t0134900-01	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF14	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000009D020
RefSeq:XP_015626728.1	SEG:seg	:	:	:	:

Description

(1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC 3.2.1.8) (Fragment). (Os01t0134900-01)

Coordinates

chr1:-:1912561..1915094

Molecular Weight (calculated)

61367.4 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.252

Length

557 amino acids

Sequence
(BLAST)

001: MACTKGVVFD VNLLENSTLE DGLAGWAAVG ECTALSVHNE EPEKVPTETI NTVADDYKPS GRYILAAGRA GEEDGLRRAV AGALKPRVTY RVAGWISLGD
101: GAEGSHPVRV NLRLDDDDEC VVEGGAVCAQ AGRWTEIKGA FRLKASPCGA TVFVQGAPDG VDVKVMDLQI FATDRRARFR KLRKKTDKVR KRDVVLKFGG
201: AGSISGASVR VMQMDSSFPF GACINGGVIQ NPAFVDFFTK HFDWAVFENE LKWYWTEAQQ GQLNYADADA LLDFCDRYGK PVRGHCIFWA VDNVVQQWIK
301: GLDHDQLTAA VQGRLTGLLT RYAGRFPHYD VNNEMLHGSF YQDRLGDDIN AFMFRETARL DPGATLFVND YNVEGGNDPN ATPEKYIEQI TALQQKGAAV
401: GGIGLQGHVT NPVGEVICDA LDKLATTDLP VWLTELDVCE SDVDLRADDL EVVLREAYAH PAVEGVMFWG FMQGHMWRQD ACLVNSDGTV NDAGERFIDL
501: RREWTSHARG HIDGDGHFKF RGFHGTYVVQ LATATGKMHK TFTVEKGDTP LVLDMDV

Best Arabidopsis Sequence Match ( AT1G58370.1 )
(BLAST)

001: MEVSRKDNEE PEKQNNNNVA SIIGSDRTNV IVNHDFSSGM HSWHPNCCEA FVVTAESNVS HGVLDPSKCG SYVVVKNRKE TWQGLEQDIT NRVKPCSLYK
101: VSATVAVSGP VHGLVEVMAT LKLESQQSQT NYQFIAKTCV FKEKWVRLEG MFSLPSLPEK VVFYLEGPSP GIDLLIQSVT IHRESEPELE RVTAEDETIV
201: VNPNFEDGLN NWSGRSCKIV LHDSMADGKI VPESGKVFAS ATERTQNWNG IQQEITGKVQ RKRVYEATAV VRIYGNNVTT ATVQATLWVQ NPNQRDQYIG
301: ISTVQATDKE WIHLKGKFLL NGSASRVVIY IEGPPPGTDI LLNSLTVKHA EKIPPSPPPS IENPAFGVNI LTNSHLSDDT TNGWFSLGNC TLSVAEGSPR
401: ILPPMARDSL GAHERLSGRY ILVTNRTQTW MGPAQMITDK LKLFLTYQIS VWVKVGSGIN SPQNVNVALG IDSQWVNGGQ VEINDDRWHE IGGSFRIEKN
501: PSKALVYVQG PSSGIDLMVA GLQIFPVDRL ARIKHLKRQC DKIRKRDVIL KFAGVDSSKF SGASVRVRQI RNSFPVGTCI SRSNIDNEDF VDFFLKNFNW
601: AVFANELKWY WTEPEQGKLN YQDADDMLNL CSSNNIETRG HCIFWEVQAT VQQWIQNMNQ TDLNNAVQNR LTDLLNRYKG KFKHYDVNNE MLHGSFYQDK
701: LGKDIRVNMF KTAHQLDPSA TLFVNDYHIE DGCDPKSCPE KYTEQILDLQ EKGAPVGGIG IQGHIDSPVG PIVCSALDKL GILGLPIWFT ELDVSSVNEH
801: IRADDLEVMM WEAFGHPAVE GIMLWGFWEL FMSRDNSHLV NAEGDVNEAG KRFLAVKKDW LSHANGHIDQ NGAFPFRGYS GNYAVEVITT SSSKVLKTFG
901: VDKEDSSQVI TVDLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.