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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 7
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:extracellular, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:extracellular
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER96324 Sorghum mitochondrion 82.56 82.79
Zm00001d019586_P008 Maize mitochondrion 82.02 82.17
TraesCS2A01G122200.1 Wheat mitochondrion 82.02 82.09
TraesCS2D01G124900.1 Wheat mitochondrion 81.93 82.0
HORVU2Hr1G021350.12 Barley mitochondrion 81.65 81.5
TraesCS2B01G144300.3 Wheat mitochondrion 82.11 80.0
PGSC0003DMT400012713 Potato cytosol, extracellular, nucleus 22.34 61.5
KRH61477 Soybean cytosol 37.69 56.01
Os05t0319900-00 Rice cytosol, mitochondrion, plastid, vacuole 11.35 55.8
KRH52165 Soybean cytosol, nucleus 37.24 55.26
Solyc12g088210.1.1 Tomato mitochondrion 46.14 55.16
VIT_18s0001g08370.t01 Wine grape mitochondrion 46.78 54.38
PGSC0003DMT400030115 Potato mitochondrion 45.41 54.29
KRH15483 Soybean mitochondrion 45.41 53.76
KRH05535 Soybean mitochondrion 45.23 53.49
Os01t0134800-01 Rice extracellular, mitochondrion, vacuole 17.53 52.45
CDY53797 Canola cytosol 43.78 52.33
PGSC0003DMT400012716 Potato mitochondrion 45.87 52.22
AT1G58370.2 Thale cress cytosol 44.78 52.17
Bra027867.1-P Field mustard cytosol 43.6 52.12
CDY48844 Canola cytosol 43.42 51.9
GSMUA_Achr1P24570_001 Banana cytosol 55.49 51.56
Os03t0672900-00 Rice extracellular 35.33 51.45
AT4G08160.1 Thale cress cytosol 34.97 51.2
Bra031698.1-P Field mustard cytosol 49.14 51.18
Os01t0134900-01 Rice extracellular 25.61 50.63
AT1G10050.3 Thale cress endoplasmic reticulum, plasma membrane, vacuole 48.59 48.86
CDY29140 Canola cytosol 34.97 45.13
Solyc04g077190.2.1 Tomato extracellular 45.96 44.23
Bra039768.1-P Field mustard cytosol 35.97 40.24
CDX75175 Canola cytosol 34.79 40.15
CDY53833 Canola endoplasmic reticulum, extracellular 49.41 37.41
CDY22606 Canola endoplasmic reticulum, vacuole 48.96 37.02
Os03t0243700-01 Rice cytosol 12.99 35.4
Os05t0304900-01 Rice extracellular, vacuole 13.9 30.97
Os03t0201901-00 Rice cytosol 15.71 30.35
Os03t0201500-01 Rice vacuole 15.08 28.92
Os10t0351700-01 Rice plasma membrane 13.53 25.65
Os03t0201800-01 Rice extracellular 13.26 25.09
Os10t0351600-00 Rice cytosol 11.81 22.15
Protein Annotations
Gene3D:2.60.120.260MapMan:21.2.2.2.4Gene3D:3.20.20.80EMBL:AK100891ProteinID:BAC57375.2ProteinID:BAF21475.1
ProteinID:BAT01344.1InterPro:CenC_carb-bdInterPro:GH10InterPro:GH10_ASGO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798
InterPro:Galactose-bd-like_sfInterPro:Glycoside_hydrolase_SFInterPro:IPR001000InterPro:IPR008979EnsemblPlantsGene:Os07g0456700EnsemblPlants:Os07t0456700-01
PFAM:PF00331PFAM:PF02018PRINTS:PR00134ScanProsite:PS00591PFscan:PS51760PANTHER:PTHR31490
PANTHER:PTHR31490:SF15UniProt:Q84YR7SMART:SM00633SUPFAM:SSF49785SUPFAM:SSF51445UniParc:UPI0000213050
SEG:seg:::::
Description
Similar to (1,4)-beta-xylan endohydrolase (EC 3.2.1.8). (Os07t0456700-01)
Coordinates
chr7:+:15884357..15890031
Molecular Weight (calculated)
123379.0 Da
IEP (calculated)
7.060
GRAVY (calculated)
-0.382
Length
1101 amino acids
Sequence
(BLAST)
0001: MRRRWGCLSS LCRPRRGGRA AAAPLPQPDP PRLESKEVEE HGASDKVVME NILSNNDFSE GLHLWHPNGC HGFVAVEGSG YHHGIRPHSG SNYAVLTRRT
0101: HNWQGLEQDI TEKVTVGTEY IVAAHVRVHG ELNEPVGIQA TLKLEGDGSS TNYQSVARIS ASKDCWEKLE GSFELKTLPR RLVFYIEGPP PGVDLLIDSV
0201: TISYKKTERA ASKLVSGTEN IISNYDFSEG LHLWNPICCH AYVASQWSGF LDGIRGSSGE NYAVVSKRTE SWQGLEQDIT DKVSAGTAYA VSAYVRVDGN
0301: IHTKVEVKAT LRLHNTDDST HYSPVGSLLA SKEKWEKMEG SFCLTNMPKR VVFYLEGPPA GVDLIIDSVN VTCSGYQQLK EVKVPSGVDT IVKNPHFDEG
0401: LNNWSGRGCN ICRHELTAYG NVKPLNGSYF ASATGRVHNW NGIQQDITGR VQRKVLYEIS SAVRIFGSAN DTEVCVTLWV QEYGRERYVS LAKNPASDKQ
0501: WTHLKGKFLL HAPFSKAVIF VEGPPAGIDI LVDGLVLSPA RKLHAAPRPR IENVSYGANV IHNSAFSHGL SGWSPMGSCR LSIHTESPHM LSAILKDPSA
0601: KQHIRGSYIL ATNRTDVWMG PSQLITDKLR LHTTYRVSAW VRAGSGGHGR YHVNVCLAVD HQWVNGGQVE ADGDQWYELK GAFKLEKKPS KVTAYVQGPP
0701: PGVDLRVMGF QIYAVDRKAR FEYLKEKTDK VRKRDVILKF QGSDAANLFG SSIKIQQTEN SFPFGSCIGR SNIENEDLAD FFMKNFNWAV FENELKWYWT
0801: EAEQGRLNYK DSDELLEFCR KHNIQVRGHC LFWEVEDSVQ PWIRSLHGHH LMAAIQNRLQ SLLSRYKGQF KHHDVNNEML HGSFYQDRLG NDIRAHMFRE
0901: AHKLDPSAVL FVNDYNVEDR CDSKSTPEKL IEQIVDLQER GAPVGGIGLQ GHITHPVGDI ICDSLDKLSI LGLPIWITEL DVTAENEHIR ADDLEVYLRE
1001: AFAHPSVEGI ILWGFWELFM FREHAHLVDV DGTINEAGKR YIALKQEWLT SITGNVDHHG ELKFRGYHGS YTVEVATPSG KVTRSFVVDK DNAVQVVTLN
1101: I
Best Arabidopsis Sequence Match ( AT1G10050.1 )
(BLAST)
0001: MADLNIVMNG DFFAGIEPWY PNGCEAFVVS SDPFSSEVMS ADSSSGGYVV VTNRKETWQG LEQDITTRVA SGMNYTVSTC VGVSGPFNES AEVLSTVRLE
0101: HEDSPTEYLC IGKTYASRDK WVDLEGTFSI SNMPDRVVLY LEGPAPGKDL LIRSVTVRSS TSSDFQETEK NTDASNVFPL ALNIIKNHDF SDGLYSWNTN
0201: GCDSFVVSSN DCNLESNAVV NNRSETWQGL EQDITDNVSP GFSYKVSASV SVSGPVLGSA QVLATLKLEH KSSATEFQLI GKTYASKDIW KTLEGTFEVS
0301: GRPDRVVFFL EGPPPGIDLL VKSVTIHCES DNQFERSREF CSAPESDNHI FLNSSFSDGL NHWSGRGCNL MLHESLADGK ILPDSGTCFA SASERTHKWS
0401: GIEQDITERV QRKLIYEASS VVRLSHSHHT VQATLYVQYL DQREEYIGIS SVQGTHDDWV ELKGKFLLNG SPARAVVYIE GPPPGIDVFV DHFAVKPAEK
0501: ETPSGRPYIE SHAFGMNIVS NSHLSDGTIE GWFPLGDCHL KVGDGSPRIL PPLARDSLRK TQGYLSGRYV LATNRSGTWM GPAQTITDKV KLFVTYQVSA
0601: WVKIGSGGRT SPQDVNIALS VDGNWVNGGK VEVDDGDWHE VVGSFRIEKE AKEVMLHVQG PSPGVDLMVA GLQIFAVDRK ARLSYLRGQA DVVRKRNVCL
0701: KFSGLDPSEL SGATVKIRQT RNSFPLGSCI SRSNIDNEDF VDFFLNNFDW AVFGYELKWY WTEPEQGNFN YRDANEMIEF CERYNIKTRG HCIFWEVESA
0801: IQPWVQQLTG SKLEAAVENR VTDLLTRYNG KFRHYDVNNE MLHGSFYRDR LDSDARANMF KTAHELDPLA TLFLNEYHIE DGFDSRSSPE KYIKLVHKLQ
0901: KKGAPVGGIG IQGHITSPVG HIVRSALDKL STLGLPIWFT ELDVSSTNEH IRGDDLEVML WEAFAHPAVE GVMLWGFWEL FMSREHSHLV NADGEVNEAG
1001: KRFLEIKREW LSFVDGEIED GGGLEFRGYH GSYTVEVVTS ESKYVTNFVV DKGNSPVDVI IDL
Arabidopsis Description
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G10050]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.