CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52165	Soybean	cytosol, nucleus	96.22	96.09
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	39.14	72.5
AT4G08160.1	Thale cress	cytosol	66.94	65.96
KRH15483	Soybean	mitochondrion	81.38	64.84
KRH05535	Soybean	mitochondrion	81.38	64.77
VIT_18s0001g08370.t01	Wine grape	mitochondrion	75.98	59.45
Solyc12g088210.1.1	Tomato	mitochondrion	72.47	58.31
PGSC0003DMT400030115	Potato	mitochondrion	72.06	57.98
PGSC0003DMT400012716	Potato	mitochondrion	75.3	57.7
CDY48844	Canola	cytosol	71.66	57.65
Bra027867.1-P	Field mustard	cytosol	71.53	57.55
CDY53797	Canola	cytosol	71.12	57.22
CDY29140	Canola	cytosol	65.86	57.21
AT1G58370.2	Thale cress	cytosol	72.06	56.51
CDX75175	Canola	cytosol	65.86	51.15
Solyc04g077190.2.1	Tomato	extracellular	75.44	48.86
Bra039768.1-P	Field mustard	cytosol	63.7	47.97
HORVU2Hr1G021350.12	Barley	mitochondrion	57.09	38.35
EER96324	Sorghum	mitochondrion	56.55	38.16
TraesCS2A01G122200.1	Wheat	mitochondrion	56.55	38.09
TraesCS2D01G124900.1	Wheat	mitochondrion	56.41	38.0
Zm00001d019586_P008	Maize	mitochondrion	56.14	37.85
Os07t0456700-01	Rice	plasma membrane	56.01	37.69
TraesCS2B01G144300.3	Wheat	mitochondrion	56.55	37.08
GSMUA_Achr1P24570_001	Banana	cytosol	58.43	36.54
KRG91114	Soybean	nucleus	3.78	33.33
KRH51408	Soybean	extracellular	23.35	31.4
KRH60710	Soybean	extracellular	23.48	31.24
KRH35662	Soybean	cytosol, nucleus, vacuole	16.06	28.74
KRG91113	Soybean	endoplasmic reticulum, plasma membrane, vacuole	22.27	28.45
KRH35663	Soybean	plasma membrane, vacuole	21.59	27.54
KRH29254	Soybean	cytosol	20.78	27.21
KRG91115	Soybean	cytoskeleton, cytosol, plastid	6.21	25.7
KRH29253	Soybean	extracellular, vacuole	18.49	24.2

Protein Annotations

EntrezGene:100801147	Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EMBL:ACUP02002170	InterPro:CenC_carb-bd
ncoils:Coil	InterPro:GH10	InterPro:GH10_AS	EnsemblPlantsGene:GLYMA_04G049700	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:K7KI56	ProteinID:KRH61476.1
EnsemblPlants:KRH61477	ProteinID:KRH61477	ProteinID:KRH61477.1	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134
ScanProsite:PS00591	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	MetaCyc:PWY-6784	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000296915D	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:4028381..4032168

Molecular Weight (calculated)

82686.3 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.322

Length

741 amino acids

Sequence
(BLAST)

001: MENLQKINAG NHSETTNKGC VSTEEESIII NPQFDDGLNN WSGRGCKIAL HDSMGEGKIL PKTGKVFASA TERTQSWNGI QQEITGRVQR KLAYEVTAVV
101: RIFGNNITTS DVRATLYVQA PDCREQYIGI ANVQATDKDW VQMQGKFLLN GSPSKVVVYL EGPPPGADIL VNTLVIKHAD KTPPSTPPDC EGAAFGVNII
201: ENSNLANGTN GWFPLGNCTL SVGTGSPRII PPIARDSLGP HESLSGRHIL VTNRTQTWMG PAQMITEKLK LFLTYQVSAW VRIGSRSTGP QNVNVALSVD
301: NQWVNGGQVE VADDRWHEIG GSFRIEKQPS KVMVYIQGPA SGLDLMVAGL QIFAVDRHAR FKYLRRQTDK IRKREIILKF SGLDSIGNLG TLVRVKQVQN
401: DFPIGSCISR SNIDNEDFVD FFVKHFNWAV FGNELKWYWT EPQQGNLNYK DADEMLDLCQ KNKIDTRGHC IFWDVDGTVQ QWIKSLNKND LMTAVQNRLN
501: GLLTRYIGKF KHYDVNNEML HGTFYQDRLG KDIRANMFKI AHQLDPSATL FVNDYHVEDG CDTRSSPEKY IQHVLDLQEQ GAPVGGIGIQ GHIDSPVGPI
601: VCSALDKMGT LGIPIWFTEL DVSSTNEYVR ADDLEVMLRE ALAHPAIDGV MLWGFWELFM SRENSHLVNA EGELNEAGKR YLALKQEWLS HSHGYVDEQG
701: QFSFRGFSGT YNVEVVTLAK KVTKTFVVDK GDSSLVVSID L

Best Arabidopsis Sequence Match ( AT4G08160.1 )
(BLAST)

001: MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL

Arabidopsis Description

Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.