CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35662	Soybean	cytosol, nucleus, vacuole	80.95	16.43
KRH35663	Soybean	plasma membrane, vacuole	88.1	12.74
CDY49599	Canola	extracellular, vacuole	53.57	12.71
KRG91113	Soybean	endoplasmic reticulum, plasma membrane, vacuole	77.38	11.21
CDX71170	Canola	cytosol, plastid, vacuole	54.76	10.13
Bra017610.1-P	Field mustard	extracellular, vacuole	53.57	9.83
Bra036392.1-P	Field mustard	cytosol	54.76	8.78
AT2G14690.1	Thale cress	vacuole	57.14	8.42
KRH29254	Soybean	cytosol	55.95	8.3
KRH29253	Soybean	extracellular, vacuole	54.76	8.13
CDX72430	Canola	extracellular, vacuole	54.76	8.11
AT4G33820.1	Thale cress	extracellular, vacuole	54.76	8.07
CDY49377	Canola	extracellular, vacuole	53.57	7.89
AT4G33810.3	Thale cress	extracellular, vacuole	52.38	7.73
KRH60710	Soybean	extracellular	47.62	7.18
KRH51408	Soybean	extracellular	44.05	6.72
KRH52165	Soybean	cytosol, nucleus	34.52	3.91
KRH61477	Soybean	cytosol	33.33	3.78
KRH05535	Soybean	mitochondrion	32.14	2.9
KRH15483	Soybean	mitochondrion	30.95	2.8
KRG91115	Soybean	cytoskeleton, cytosol, plastid	0.0	0.0
CDY49598	Canola	cytosol	0.0	0.0
CDX72432	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.20.20.80	MapMan:35.1	EMBL:ACUP02012662	InterPro:GH10	EnsemblPlantsGene:GLYMA_20G134400	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	UniProt:K7N398	EnsemblPlants:KRG91114	ProteinID:KRG91114	ProteinID:KRG91114.1
PFAM:PF00331	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF18	MetaCyc:PWY-6784	SUPFAM:SSF51445
UniParc:UPI000296D051	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:37410460..37410738

Molecular Weight (calculated)

9759.4 Da

IEP (calculated)

4.805

GRAVY (calculated)

-0.781

Length

84 amino acids

Sequence
(BLAST)

1: MTSFTNEMKW YSTEENYTIP DAMMKFTKEN GISDNPKQQP EWVKTLSSEK SGEAAAESMK SVVSRYKGEL IAWDVMNENI HFHF

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.