CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61477	Soybean	cytosol	96.09	96.22
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	39.22	72.75
AT4G08160.1	Thale cress	cytosol	66.71	65.82
KRH15483	Soybean	mitochondrion	81.67	65.16
KRH05535	Soybean	mitochondrion	81.67	65.09
VIT_18s0001g08370.t01	Wine grape	mitochondrion	76.01	59.56
Solyc12g088210.1.1	Tomato	mitochondrion	72.78	58.63
PGSC0003DMT400030115	Potato	mitochondrion	72.51	58.41
PGSC0003DMT400012716	Potato	mitochondrion	75.74	58.12
CDY48844	Canola	cytosol	72.1	58.09
Bra027867.1-P	Field mustard	cytosol	71.97	57.98
CDY53797	Canola	cytosol	71.83	57.87
CDY29140	Canola	cytosol	65.77	57.21
AT1G58370.2	Thale cress	cytosol	72.24	56.72
CDX75175	Canola	cytosol	66.04	51.36
Solyc04g077190.2.1	Tomato	extracellular	75.88	49.21
Bra039768.1-P	Field mustard	cytosol	63.61	47.97
HORVU2Hr1G021350.12	Barley	mitochondrion	56.47	37.99
TraesCS2A01G122200.1	Wheat	mitochondrion	55.93	37.73
TraesCS2D01G124900.1	Wheat	mitochondrion	55.8	37.64
EER96324	Sorghum	mitochondrion	55.26	37.34
Os07t0456700-01	Rice	plasma membrane	55.26	37.24
Zm00001d019586_P008	Maize	mitochondrion	54.99	37.12
TraesCS2B01G144300.3	Wheat	mitochondrion	55.93	36.73
GSMUA_Achr1P24570_001	Banana	cytosol	58.22	36.46
KRG91114	Soybean	nucleus	3.91	34.52
KRH51408	Soybean	extracellular	23.32	31.4
KRH60710	Soybean	extracellular	23.45	31.24
KRH35662	Soybean	cytosol, nucleus, vacuole	16.31	29.23
KRG91113	Soybean	endoplasmic reticulum, plasma membrane, vacuole	22.24	28.45
KRH29254	Soybean	cytosol	21.02	27.56
KRH35663	Soybean	plasma membrane, vacuole	21.56	27.54
KRG91115	Soybean	cytoskeleton, cytosol, plastid	6.47	26.82
KRH29253	Soybean	extracellular, vacuole	18.87	24.73

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EMBL:ACUP02003410	InterPro:CenC_carb-bd	ncoils:Coil
InterPro:GH10	InterPro:GH10_AS	EnsemblPlantsGene:GLYMA_06G050200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	UniProt:I1K8B0	InterPro:IPR001000	InterPro:IPR008979	EnsemblPlants:KRH52165	ProteinID:KRH52165
ProteinID:KRH52165.1	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134	ScanProsite:PS00591	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	MetaCyc:PWY-6784	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI000233A121	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3813874..3817483

Molecular Weight (calculated)

82888.3 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.348

Length

742 amino acids

Sequence
(BLAST)

001: MENLQKINAE NHSEKTTSKG CVSSEDESII INPQFDDGLN NWSGRGCKIA LHDSMGDGKI LPKTGKVFAS ATERTQSWNG IQQEITGRVQ RKLAYEVTAV
101: VRIFGNNVTT SDVRATLYVQ APDLREQYIG IANVQATDKD WVQMQGKFLL NGSPSKVVVY LEGPAPGTDI LVNTFVIKHA DKTPPSTPPD CEGAAFGVNI
201: IENSNLANGT NGWFPLGNCT LSVGTGSPRI IPPMARDSLG PHESLSGRYV LVTNRTQTWM GPAQMITEKL KLFLTYQVSA WVRIGNGSSG PQNVNVALSV
301: DNQWVNGGQV EVADDRWHEI GGSFRIEKQP SKVMVYIQGP ASGVDLMLAG LQIFAVDRHA RFKYLRRQTD KIRKREIILK FSGLDSIGNL GTLVRVKQVQ
401: NDFPIGSCIS RSNIDNEDFV DFFVKHFNWA VFGNELKWYW TEPQQGNLNY KDADEMLDLC QKNKIDTRGH CIFWDVDNTV QQWIKSLNKT DLMTAVQNRL
501: NGLLTRYKGK FKHYDVNNEM LHGSFYQDRL GKDIRANMFK TAHQIDPSAT LFVNDYHVED GCDTRSSPEK YIQHILDLKE QGAPVSGIGI QGHIDSPVGP
601: IVCSALDKMG TLGIPIWFTE LDVSSTNEYV RADDLEVMLR ESLAHPAIDG VMLWGFWELF MSRENSHLVN AEGELNEAGK RYLALKQEWL SHSHGYVDEQ
701: GQFSFRGFSG TYNVEVVTLA KKVTKTFVVD KGDSSLVVSI DL

Best Arabidopsis Sequence Match ( AT4G08160.1 )
(BLAST)

001: MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL

Arabidopsis Description

Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.