Factsheet for Bra039768.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G08160.1	Thale cress	cytosol	63.62	83.24
CDY29140	Canola	cytosol	70.63	81.48
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	27.13	66.75
KRH61477	Soybean	cytosol	47.97	63.7
KRH52165	Soybean	cytosol, nucleus	47.97	63.61
Bra027867.1-P	Field mustard	cytosol	50.71	54.18
VIT_18s0001g08370.t01	Wine grape	mitochondrion	51.02	53.01
KRH05535	Soybean	mitochondrion	49.7	52.52
KRH15483	Soybean	mitochondrion	49.59	52.47
Solyc12g088210.1.1	Tomato	mitochondrion	48.68	52.01
PGSC0003DMT400030115	Potato	mitochondrion	47.66	50.92
PGSC0003DMT400012716	Potato	mitochondrion	48.27	49.12
Bra031698.1-P	Field mustard	cytosol	45.73	42.57
Solyc04g077190.2.1	Tomato	extracellular	48.37	41.61
HORVU2Hr1G021350.12	Barley	mitochondrion	41.06	36.63
TraesCS2D01G124900.1	Wheat	mitochondrion	40.75	36.45
TraesCS2A01G122200.1	Wheat	mitochondrion	40.75	36.45
EER96324	Sorghum	mitochondrion	40.24	36.07
Os07t0456700-01	Rice	plasma membrane	40.24	35.97
Zm00001d019586_P008	Maize	mitochondrion	39.84	35.67
TraesCS2B01G144300.3	Wheat	mitochondrion	40.96	35.66
GSMUA_Achr1P24570_001	Banana	cytosol	39.94	33.16
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	16.97	29.61
Bra017610.1-P	Field mustard	extracellular, vacuole	12.2	26.2
Bra036392.1-P	Field mustard	cytosol	13.92	26.14
Bra034584.1-P	Field mustard	vacuole	15.04	25.83
Bra034585.1-P	Field mustard	vacuole	14.53	24.96
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	14.23	24.39
Bra017609.1-P	Field mustard	nucleus	14.53	21.44

Protein Annotations

Gene3D:2.40.50.140	Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EnsemblPlantsGene:Bra039768	EnsemblPlants:Bra039768.1
EnsemblPlants:Bra039768.1-P	InterPro:CenC_carb-bd	InterPro:DUF223	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:M4FF96	InterPro:NA-bd_OB-fold
PFAM:PF00331	PFAM:PF02018	PFAM:PF02721	PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490
PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF50249	SUPFAM:SSF51445	UniParc:UPI0002546DCC
SEG:seg	:	:	:	:	:

Description

AT4G08160 (E=2e-299) | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein

Coordinates

chrA01:+:8777116..8798888

Molecular Weight (calculated)

110808.0 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.278

Length

984 amino acids

Sequence
(BLAST)

001: MADKKGIKVH ATCRKNYLKS LGDKCIVGEW KTIENFQVSE PGKQFRPTKL MYKISFINQT VIKPNDFQNN DMFLALAEFD FVLSGSLETE FLIDIVGQAI
101: DVGELRILHS NGKKLRKIEF TLRNVSDVCI QCCLWGKIAD EMENHREEAQ FGVVVEDPAL LPECIKEIVG KTFRYGITFD KGGDTKFKVL KVWSVYNTLM
201: VDSQSETMSG KGTTAISGSE FQSTNNRMKD DSGIHSHGQP SRKKKRKQYE DENNPSLTIS QKPNRNLGVV FQDVTNIPQI QAATERKAAW NGIQQEISGR
301: CQRKRVYEVT SVVRIFGNNA TSATVQATLW VLNANQREQY IAIANVQASN KDWVELKGKF LIHGSPSRII LYLEGPPPGT DILVNTLDVK HARRNRPSPP
401: PFYEVCALTI NSALKLAIAR FVVWINPGFG INIVENSEVR DGETQPWFTL GNCKLGVGQG APRTLPPMAR ETLGSHKPLG GSYILVTNRS QTWMGPAQMI
501: TDKIKLFLTY QISAWVKLSV GASSGINPQN VNIALSVDNQ WVNGGQVEVS VGETWHELGG SFRLEKQPQN VMVYVQGPAA GIDLMIAGLQ IFPVDRRERI
601: RCLKKQVDEV RKRDIILKFS GLDESCDLFP YIVKVKQTHN SFPVGTCINR TDIDNEDFVD FFIKNFNWAV FGNELKWYWT EAERGKLNYQ DADDMLDLCI
701: GNNINVRGHC IFWEVESTVQ PWVRQLNKTE LMNAVQKRLT DILTRYKGKF KHYDVNNEML HGSFYQDRLG KGVRALMFNI AHKLDPSALL FVNDYHVEDG
801: DDTRSSPEKY SRLVLELEAQ GAPIGGIGIQ GHIDSPVGAI VSSALDNLSV LGHPIWFTEL DVSSRNEFVR GEDLEVMLWE AFAHPAVEGI MLWGFWELSM
901: SRENSNLVEG EGEVNEAGKR FLDVKQEWLS HAYGIISDES EFIFRGYHGT YAVEVCTPAG IVLKTFVVEK GESPLVLSID LSYL

Best Arabidopsis Sequence Match ( AT4G08160.1 )
(BLAST)

001: MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL

Arabidopsis Description

Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.