Factsheet for Solyc12g088210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
vacuole 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030115	Potato	mitochondrion	95.98	95.98
KRH52165	Soybean	cytosol, nucleus	58.63	72.78
KRH61477	Soybean	cytosol	58.31	72.47
VIT_18s0001g08370.t01	Wine grape	mitochondrion	70.58	68.64
KRH15483	Soybean	mitochondrion	69.27	68.6
KRH05535	Soybean	mitochondrion	69.16	68.42
Solyc04g077200.1.1	Tomato	cytosol	7.17	64.08
Bra027867.1-P	Field mustard	cytosol	63.95	63.95
CDY48844	Canola	cytosol	63.74	63.74
CDY53797	Canola	cytosol	63.63	63.63
AT4G08160.1	Thale cress	cytosol	51.68	63.3
AT1G58370.2	Thale cress	cytosol	64.71	63.07
Solyc04g077190.2.1	Tomato	extracellular	75.9	61.1
CDY29140	Canola	cytosol	50.49	54.51
CDX75175	Canola	cytosol	50.49	48.74
Bra039768.1-P	Field mustard	cytosol	52.01	48.68
HORVU2Hr1G021350.12	Barley	mitochondrion	56.46	47.14
TraesCS2D01G124900.1	Wheat	mitochondrion	56.03	46.91
TraesCS2A01G122200.1	Wheat	mitochondrion	55.7	46.64
EER96324	Sorghum	mitochondrion	55.27	46.36
Os07t0456700-01	Rice	plasma membrane	55.16	46.14
Zm00001d019586_P008	Maize	mitochondrion	54.61	45.77
TraesCS2B01G144300.3	Wheat	mitochondrion	56.03	45.66
GSMUA_Achr1P24570_001	Banana	cytosol	55.05	42.78
Solyc01g111340.2.1	Tomato	extracellular	17.48	29.43
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	18.68	29.4
Solyc11g040330.1.1	Tomato	extracellular	16.72	28.05
Solyc10g055340.1.1	Tomato	cytosol	6.51	27.27
Solyc01g105500.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	16.5	26.48
Solyc05g051260.2.1	Tomato	golgi, vacuole	16.29	26.0
Solyc10g055370.1.1	Tomato	vacuole	15.74	25.85
Solyc11g043160.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	15.2	24.14
Solyc01g106990.1.1	Tomato	vacuole	14.44	23.05
Solyc01g106980.1.1	Tomato	cytosol	14.77	12.32

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	InterPro:CenC_carb-bd	ncoils:Coil	InterPro:GH10
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979
UniProt:K4DGP2	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490
PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	EnsemblPlantsGene:Solyc12g088210.1	EnsemblPlants:Solyc12g088210.1.1
UniParc:UPI000276A9C6	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:63652077..63657365

Molecular Weight (calculated)

102907.0 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.309

Length

921 amino acids

Sequence
(BLAST)

001: MKGFSASSFA RRIFKSNSQS PKENRENTGS YDAINVILNH DFSEELHLWR TNCCNAFVVP AGSGNYKGTA EDVGCSYAVV TNRTECWQGL EQDITSRISA
101: GCDYTVSACV GVSGTFHGST DVLATLRLVY QNANTDYLFI SKKSVMGEGW HMLEGSFSLS TMPDQVVFYL EGPSPGSDLL IKSVIITSPG CTDYESSRPT
201: SSCTDDEKII VNANFDYSLN SWSGRGCKVV CLDCMADANI NPTSGKYFAS ATERKQSWNG IQQDITGRVK RKLAYEMTAI VRLYGHNANS ADVRGTLWVQ
301: AADNREQYIG IAKVQATDKD WVQLQGKFLL NDSPSKAVIF LEGPPPGTDI LLNSLVVNHV VKPLPPPPPV VENAVFGVNI ITNTHLNNGT NGWFPLGNCR
401: MSVQTGSPHI IPPMARDSLG SRENLSGRYI AVTNRTETWM GPAQVITDKV KLYLTYQVSA WVKVRHASGP QNVSVALGVD DQWVNGGQVE VSDDQWHEIG
501: GSFRIEKQAA KVMVYVQGPA AGVDLMVAGL HIFPVDRHAR FNHLKRQTDK IRKRDVILKF SGSDTVHLLG TSVRVRQQQN SFPFGSCICR TNMDNEDFND
601: FFVKNFNWAV FGNELKWYST EAQRGKFNYR DADELLDFCT RHNIQVRGHC IFWEVESTVQ EWIRSLNNND LMAALQNRLS GLLTRYRGKF KHYDVNNEMM
701: HGSYYQERLG KDIWANMFKK AHQLDPSAIL FVNDYHVEDG CDTRSSPEKY IEHILDLQDQ GAPVGGIGIQ GHIDCPVGPI VCSALDKLSI LGLPIWFTEV
801: DVSSNNEHVR ADDLEVMLRE SFAHPAVEGV VLWGFWELFM SRENAHLVNA EGELNEAGKR YLALKQEWLS HAHGHIDDQG QFRFRGFHGS YEVDFVTASK
901: KITKTFVVDK GDDALVISID I

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.