Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032748 | Potato | endoplasmic reticulum, golgi, vacuole | 96.69 | 92.96 |
| Solyc11g043160.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 43.9 | 43.45 |
| Solyc01g106990.1.1 | Tomato | vacuole | 39.9 | 39.69 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 40.42 | 39.66 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 37.46 | 37.26 |
| Solyc01g111340.2.1 | Tomato | extracellular | 34.32 | 36.01 |
| Solyc11g040330.1.1 | Tomato | extracellular | 32.93 | 34.43 |
| Solyc10g055370.1.1 | Tomato | vacuole | 32.75 | 33.51 |
| Solyc10g055340.1.1 | Tomato | cytosol | 12.72 | 33.18 |
| Solyc04g077200.1.1 | Tomato | cytosol | 5.05 | 28.16 |
| Solyc01g106980.1.1 | Tomato | cytosol | 39.02 | 20.29 |
| Solyc12g088210.1.1 | Tomato | mitochondrion | 26.48 | 16.5 |
| Solyc04g077190.2.1 | Tomato | extracellular | 27.18 | 13.64 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:CenC_carb-bd | InterPro:GH10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0016798 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | UniProt:K4B2C0 |
| PFAM:PF00331 | PFAM:PF02018 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 | SMART:SM00633 |
| SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc01g105500.2 | EnsemblPlants:Solyc01g105500.2.1 | TMHMM:TMhelix |
| UniParc:UPI0002768F8B | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:93651853..93654596
Molecular Weight (calculated)
65029.7 Da
IEP (calculated)
7.689
GRAVY (calculated)
-0.330
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTLGNNGFI LFCSLFLAGY LVHGATKPYD HSATIECHKQ PFDPQYGGGL IANPGFDKGT EAWKMDGHVK IEARESGGNK FIVAYNRTTP YSVSQSFHLK
101: KGLYYAFSAW VQLSEGSDTV VAMIYNSAQK TVITVGSVIA KSGCWSMIKG GLTVDHNAHS ELHFQSNNTK SELRVDSVSL KEFTKYEWQE NRFKNIEKVR
201: KRTLRVNVSN KNGKKIGGAK IKIQQRKLQF VIGCATPSSI LMSESYQKWF VSRFTTAVFD NEMKWYYVEG LQGHENYSTP DAMLKFFEDH GIDVRGHTVL
301: WGADNIQRWV KDLPPRQLLS ESVRRMGSIM SRYAGKLVAW DVVNENLHHP LFEERLGKNA SAIFYKIASS LDSKATMFLN EFNTLEHPGD MVSIPSKYVE
401: KLQEIKSFPG NEELVIGIGL QGHFDSHPNI PYVRAVFDLL GETKMPIWLT ELNVMPCSNQ AYYLEEIMRE AFAHPAVKGM MIWIGWKPDR CNEMCLLNYE
501: LQNSPSGEVV DKLFAEWKTT NLTGVTDKEG SFEVKVFHGD YEITVYNPNS GANVTKRVQV YDDKSETLHV SIIL
101: KGLYYAFSAW VQLSEGSDTV VAMIYNSAQK TVITVGSVIA KSGCWSMIKG GLTVDHNAHS ELHFQSNNTK SELRVDSVSL KEFTKYEWQE NRFKNIEKVR
201: KRTLRVNVSN KNGKKIGGAK IKIQQRKLQF VIGCATPSSI LMSESYQKWF VSRFTTAVFD NEMKWYYVEG LQGHENYSTP DAMLKFFEDH GIDVRGHTVL
301: WGADNIQRWV KDLPPRQLLS ESVRRMGSIM SRYAGKLVAW DVVNENLHHP LFEERLGKNA SAIFYKIASS LDSKATMFLN EFNTLEHPGD MVSIPSKYVE
401: KLQEIKSFPG NEELVIGIGL QGHFDSHPNI PYVRAVFDLL GETKMPIWLT ELNVMPCSNQ AYYLEEIMRE AFAHPAVKGM MIWIGWKPDR CNEMCLLNYE
501: LQNSPSGEVV DKLFAEWKTT NLTGVTDKEG SFEVKVFHGD YEITVYNPNS GANVTKRVQV YDDKSETLHV SIIL
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.