Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g105500.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 92.96 | 96.69 |
| PGSC0003DMT400024766 | Potato | cytosol | 37.52 | 43.84 |
| PGSC0003DMT400021703 | Potato | mitochondrion | 24.12 | 37.99 |
| PGSC0003DMT400037865 | Potato | cytosol | 36.01 | 37.85 |
| PGSC0003DMT400015813 | Potato | cytosol | 31.83 | 37.55 |
| PGSC0003DMT400059688 | Potato | cytosol, mitochondrion | 26.97 | 37.1 |
| PGSC0003DMT400031416 | Potato | cytosol, mitochondrion | 20.94 | 37.09 |
| PGSC0003DMT400085040 | Potato | cytosol | 10.39 | 29.95 |
| PGSC0003DMT400012713 | Potato | cytosol, extracellular, nucleus | 18.59 | 27.75 |
| PGSC0003DMT400030115 | Potato | mitochondrion | 25.29 | 16.4 |
| PGSC0003DMT400012716 | Potato | mitochondrion | 26.13 | 16.13 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:CenC_carb-bd | InterPro:GH10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0016798 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | UniProt:M1AXY6 |
| PFAM:PF00331 | PFAM:PF02018 | EnsemblPlantsGene:PGSC0003DMG400012574 | PGSC:PGSC0003DMG400012574 | EnsemblPlants:PGSC0003DMT400032748 | PFscan:PS51760 |
| PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 | SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000295B383 | SEG:seg | : | : | : |
Description
Endo-1,4-beta-xylanase C [Source:PGSC_GENE;Acc:PGSC0003DMG400012574]
Coordinates
chr1:+:82156330..82159318
Molecular Weight (calculated)
67437.9 Da
IEP (calculated)
7.146
GRAVY (calculated)
-0.222
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTLGNNGFI LFCSLFLAGY LVHGATLYEY SATIECHKQP LDPQYGGGLI ANPGFDKGIE AWKIDGHVKI EARESGGNKF IVAYNRTTPY SVSQSFHLKK
101: GLYYAFSAWV QLSEGSDTVV AMIYNSAQKT VIIVGSVIAK SGCWSMIKGG LTVDHNAPSV LHFQSNNTKS ELRVDSVSLK EFTKYEWQEN RLKNIEKVRK
201: RTLRVIVSNK DGKKIGGAKI KIQQRKLQFV IGCATPSSIL MSESYQKWFV SRFTTAVFDN EMKWYYVEGL QGHENYSTPD AMLKFFEDHG IAVRGHTVLW
301: GADNIQRWVK DLPPRQLLSE SVRRMGSIMS RYAGKLVAWD VVNENLHHPL FEERLGKNAS AMFYKIASSL DSKATMFLNE FNTLEHPGDM VSIPSKYVEK
401: LQEIKAFPGN EELVIGIGLQ GHFDSHPNIP YVRAVFDLLG ETKMPIWLTE LNVMPCSNQV YSYHDSRPIL LVMFADGLTL SLQAYYLEEI MREAFAHPAV
501: KGMMIWIGWK PDRCNEMCLL NYELQNSPSG DVVDKLFAEW KTTNLTGVTD KEGSFEVKVF HGDYEITVYN PNSGANVTKE VQVYDDKSET LHVSISL
101: GLYYAFSAWV QLSEGSDTVV AMIYNSAQKT VIIVGSVIAK SGCWSMIKGG LTVDHNAPSV LHFQSNNTKS ELRVDSVSLK EFTKYEWQEN RLKNIEKVRK
201: RTLRVIVSNK DGKKIGGAKI KIQQRKLQFV IGCATPSSIL MSESYQKWFV SRFTTAVFDN EMKWYYVEGL QGHENYSTPD AMLKFFEDHG IAVRGHTVLW
301: GADNIQRWVK DLPPRQLLSE SVRRMGSIMS RYAGKLVAWD VVNENLHHPL FEERLGKNAS AMFYKIASSL DSKATMFLNE FNTLEHPGDM VSIPSKYVEK
401: LQEIKAFPGN EELVIGIGLQ GHFDSHPNIP YVRAVFDLLG ETKMPIWLTE LNVMPCSNQV YSYHDSRPIL LVMFADGLTL SLQAYYLEEI MREAFAHPAV
501: KGMMIWIGWK PDRCNEMCLL NYELQNSPSG DVVDKLFAEW KTTNLTGVTD KEGSFEVKVF HGDYEITVYN PNSGANVTKE VQVYDDKSET LHVSISL
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.