Factsheet for PGSC0003DMT400059688

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	62.67	80.71
Solyc10g055340.1.1	Tomato	cytosol	33.64	66.36
PGSC0003DMT400021703	Potato	mitochondrion	47.47	54.35
AT4G38300.1	Thale cress	mitochondrion	32.95	51.62
PGSC0003DMT400015813	Potato	cytosol	53.0	45.45
KRH51408	Soybean	extracellular	56.45	44.46
KRH60710	Soybean	extracellular	56.22	43.81
Os05t0304900-01	Rice	extracellular, vacuole	49.77	43.72
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	55.3	42.55
CDX90288	Canola	endoplasmic reticulum, extracellular	55.3	42.55
AT4G38650.1	Thale cress	vacuole	55.07	42.53
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	54.61	41.58
PGSC0003DMT400085040	Potato	cytosol	19.82	41.55
CDY12095	Canola	vacuole	44.7	39.84
TraesCS2A01G061600.1	Wheat	extracellular, plasma membrane, vacuole	50.69	39.57
VIT_03s0038g02180.t01	Wine grape	cytosol	55.76	38.72
TraesCS2B01G075000.1	Wheat	plastid	50.46	38.02
EES10525	Sorghum	plasma membrane, vacuole	50.0	37.8
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	48.85	36.87
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	50.0	35.93
PGSC0003DMT400024766	Potato	cytosol	38.94	33.07
PGSC0003DMT400037865	Potato	cytosol	36.41	27.82
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	25.58	27.75
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	37.1	26.97
TraesCS1D01G329900.1	Wheat	peroxisome	4.61	22.47
PGSC0003DMT400030115	Potato	mitochondrion	30.65	14.44
PGSC0003DMT400012716	Potato	mitochondrion	32.03	14.37

Protein Annotations

Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000
UniProt:M1C4L3	PFAM:PF00331	EnsemblPlantsGene:PGSC0003DMG400023204	PGSC:PGSC0003DMG400023204	EnsemblPlants:PGSC0003DMT400059688	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF3	SMART:SM00633	SUPFAM:SSF51445	UniParc:UPI000296460B

Description

Endo-1,4-beta-xylanase A [Source:PGSC_GENE;Acc:PGSC0003DMG400023204]

Coordinates

chr10:-:46767017..46769122

Molecular Weight (calculated)

49889.5 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.238

Length

434 amino acids

Sequence
(BLAST)

001: MDRGWVRVKN VDSALVTAKL KLDNQYPKCI GSVVAKKGCW SFLKGGFLWS APSNSFQIHL TERKRAVTIH VVDENGNSLP NAAVKIDQIS TDFPFGTMIA
101: STIVGNLSYQ EWFVKRFKAT VFENDLKWYK TEPLPGVFNY TIVDQMMQFV RKNKLLVRGH TMFWGNPTMI QDWVENMTVP QLQKAMDGRI KSVMSKYRNE
201: FFHWDIINEL LHFNFYEKKL GPNATLDMFK KVHRADPLVT LFLNEYNIVE NCDPRINVDM YIEKFKELKK GGVKVAGIGL QSHFSAVNPA FMRAVLDKLA
301: TLKLPIWLTE VDVSNMYKQE EQAVYLEQIL REAFSHPSVN GIMLWSALGR GGCYQMCLTD DKFQNLPTGD LIDQLLLKEW KTGTKRGKTN ELGSYNFRGF
401: LGEYNVTVIY NRSITHSYFS LGRGVETKHI TVHV

Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)

001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI

Arabidopsis Description

At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.