Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 6
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G38300.1 | Thale cress | mitochondrion | 45.37 | 92.06 |
| CDX90288 | Canola | endoplasmic reticulum, extracellular | 85.59 | 85.28 |
| Bra010733.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 84.34 | 84.04 |
| CDY12095 | Canola | vacuole | 72.78 | 83.98 |
| KRH51408 | Soybean | extracellular | 62.63 | 63.88 |
| PGSC0003DMT400021703 | Potato | mitochondrion | 41.99 | 62.27 |
| KRH60710 | Soybean | extracellular | 61.03 | 61.58 |
| PGSC0003DMT400031416 | Potato | cytosol, mitochondrion | 36.12 | 60.24 |
| PGSC0003DMT400015813 | Potato | cytosol | 52.31 | 58.1 |
| GSMUA_Achr5P11430_001 | Banana | extracellular, vacuole | 58.19 | 57.37 |
| VIT_03s0038g02180.t01 | Wine grape | cytosol | 62.63 | 56.32 |
| Os05t0304900-01 | Rice | extracellular, vacuole | 49.11 | 55.87 |
| Solyc11g040330.1.1 | Tomato | extracellular | 54.45 | 55.74 |
| PGSC0003DMT400059688 | Potato | cytosol, mitochondrion | 42.53 | 55.07 |
| Solyc01g111340.2.1 | Tomato | extracellular | 53.56 | 55.03 |
| TraesCS2A01G061600.1 | Wheat | extracellular, plasma membrane, vacuole | 53.38 | 53.96 |
| EES10525 | Sorghum | plasma membrane, vacuole | 53.2 | 52.09 |
| TraesCS2B01G075000.1 | Wheat | plastid | 53.2 | 51.91 |
| Solyc10g055370.1.1 | Tomato | vacuole | 51.6 | 51.69 |
| Zm00001d025082_P002 | Maize | endoplasmic reticulum, extracellular, plastid | 52.85 | 51.65 |
| HORVU2Hr1G011550.11 | Barley | plasma membrane, plastid, vacuole | 53.74 | 50.0 |
| PGSC0003DMT400085040 | Potato | cytosol | 17.08 | 46.38 |
| Solyc10g055340.1.1 | Tomato | cytosol | 18.15 | 46.36 |
| AT4G33830.1 | Thale cress | vacuole | 38.97 | 38.02 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 38.08 | 37.15 |
| AT4G33840.1 | Thale cress | vacuole | 37.01 | 36.11 |
| AT2G14690.1 | Thale cress | vacuole | 32.74 | 32.28 |
| AT4G33820.1 | Thale cress | extracellular, vacuole | 31.67 | 31.23 |
| AT4G33810.3 | Thale cress | extracellular, vacuole | 31.49 | 31.11 |
| AT4G08160.1 | Thale cress | cytosol | 29.54 | 22.07 |
| TraesCS1D01G329900.1 | Wheat | peroxisome | 3.2 | 20.22 |
| AT1G58370.2 | Thale cress | cytosol | 30.43 | 18.1 |
| AT1G10050.3 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 29.72 | 15.25 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | EntrezGene:830021 | ProteinID:AEE86958.1 | EMBL:AK227537 |
| ArrayExpress:AT4G38650 | EnsemblPlantsGene:AT4G38650 | RefSeq:AT4G38650 | TAIR:AT4G38650 | RefSeq:AT4G38650-TAIR-G | EnsemblPlants:AT4G38650.1 |
| TAIR:AT4G38650.1 | Unigene:At.31160 | EMBL:BT004639 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | RefSeq:NP_195577.2 | PFAM:PF00331 | PO:PO:0000293 |
| PRINTS:PR00134 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF3 | UniProt:Q84VX1 | SMART:SM00633 |
| SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000000C3FB | SEG:seg |
Description
At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
Coordinates
chr4:+:18063166..18066025
Molecular Weight (calculated)
63473.2 Da
IEP (calculated)
6.283
GRAVY (calculated)
-0.282
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.