Factsheet for PGSC0003DMT400021703

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g040330.1.1	Tomato	extracellular	95.25	65.76
AT4G38300.1	Thale cress	mitochondrion	43.8	59.93
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	49.87	56.08
PGSC0003DMT400015813	Potato	cytosol	63.85	47.83
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	54.35	47.47
Os05t0304900-01	Rice	extracellular, vacuole	56.99	43.72
PGSC0003DMT400085040	Potato	cytosol	23.48	43.0
AT4G38650.1	Thale cress	vacuole	62.27	41.99
CDX90288	Canola	endoplasmic reticulum, extracellular	62.27	41.84
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	60.95	40.96
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	61.48	40.88
TraesCS2A01G061600.1	Wheat	extracellular, plasma membrane, vacuole	56.99	38.85
EES10525	Sorghum	plasma membrane, vacuole	57.78	38.15
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	57.52	37.91
TraesCS2B01G075000.1	Wheat	plastid	57.26	37.67
CDY12095	Canola	vacuole	47.23	36.76
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	57.78	36.26
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	31.13	29.5
PGSC0003DMT400024766	Potato	cytosol	36.68	27.2
PGSC0003DMT400037865	Potato	cytosol	36.94	24.65
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	37.99	24.12
PGSC0003DMT400030115	Potato	mitochondrion	35.62	14.66
PGSC0003DMT400012716	Potato	mitochondrion	36.94	14.48

Protein Annotations

Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000
UniProt:M1AFK4	PFAM:PF00331	EnsemblPlantsGene:PGSC0003DMG400008420	PGSC:PGSC0003DMG400008420	EnsemblPlants:PGSC0003DMT400021703	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF3	SMART:SM00633	SUPFAM:SSF51445	UniParc:UPI000296960C

Description

Endo-1,4-beta-xylanase A [Source:PGSC_GENE;Acc:PGSC0003DMG400008420]

Coordinates

chr11:+:17866961..17870775

Molecular Weight (calculated)

43418.3 Da

IEP (calculated)

5.446

GRAVY (calculated)

-0.392

Length

379 amino acids

Sequence
(BLAST)

001: MNRSLVQARK RAVTIHISNK QGVRLENASL TVEQVSKDFL LGSAIAYTFI GNTPYQDWFL ERFNAAVFED EIKWYTTEPK QGQLNYTLAD ELLEFVRRNQ
101: ITVRGHNIFW EDPKYTPVWV QNLTDSELKS AVNSRIQSLM SKYKDEFVHW DVNNELLHFN FYEQRLGPNA TLEFYRTVHQ QDPLATLFLN EFNVVETCDS
201: TSTVDKYIAK IRELKEDGMS MNGIGLEGHF GAPNPPRIRA TLDKLATLGL PIWLTEVDIS DTFSKETQGI YLEQVLREGF SHPAVDGIML WSAIRRNKCY
301: RMCLTDPDLN NLPTGNVVDK LLKEWDTGVL KGPTDDHGSY SFYGFLGEYK LTASYEGKVV DAAFSLSPSH ETKHFSVQL

Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)

001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI

Arabidopsis Description

At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.