Factsheet for PGSC0003DMT400031416

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	80.71	62.67
Solyc10g055370.1.1	Tomato	vacuole	94.96	57.04
PGSC0003DMT400021703	Potato	mitochondrion	56.08	49.87
AT4G38300.1	Thale cress	mitochondrion	39.47	48.01
PGSC0003DMT400085040	Potato	cytosol	25.22	41.06
Os05t0304900-01	Rice	extracellular, vacuole	56.97	38.87
PGSC0003DMT400015813	Potato	cytosol	57.86	38.54
AT4G38650.1	Thale cress	vacuole	60.24	36.12
KRH51408	Soybean	extracellular	59.05	36.12
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	59.64	35.64
CDX90288	Canola	endoplasmic reticulum, extracellular	59.35	35.46
KRH60710	Soybean	extracellular	58.46	35.37
TraesCS2A01G061600.1	Wheat	extracellular, plasma membrane, vacuole	56.08	33.99
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	56.68	33.51
TraesCS2B01G075000.1	Wheat	plastid	55.79	32.64
VIT_03s0038g02180.t01	Wine grape	cytosol	59.05	31.84
EES10525	Sorghum	plasma membrane, vacuole	54.01	31.71
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	56.38	31.46
CDY12095	Canola	vacuole	45.4	31.42
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	53.41	31.3
PGSC0003DMT400024766	Potato	cytosol	40.95	27.01
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	26.71	22.5
PGSC0003DMT400037865	Potato	cytosol	36.2	21.48
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	37.09	20.94
TraesCS1D01G329900.1	Wheat	peroxisome	4.75	17.98
PGSC0003DMT400012716	Potato	mitochondrion	35.31	12.31
PGSC0003DMT400030115	Potato	mitochondrion	33.23	12.16

Protein Annotations

Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000
UniProt:M1AVM7	PFAM:PF00331	EnsemblPlantsGene:PGSC0003DMG400012044	PGSC:PGSC0003DMG400012044	EnsemblPlants:PGSC0003DMT400031416	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF3	SMART:SM00633	SUPFAM:SSF51445	UniParc:UPI000296A298

Description

Glycosyl hydrolase family 10 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012044]

Coordinates

chr10:-:46872782..46874503

Molecular Weight (calculated)

39197.2 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.370

Length

337 amino acids

Sequence
(BLAST)

001: MISRTILGNL PYQEWFLKRF KATVFENELK WYKTEPLPGQ FNYTVVDQMM KFVRKNKLIA RGHNMFWDDP VYVQDWLENM TAPQLQRAMK SRIKSVMSKY
101: RNEFFHWDVN NELLHFDFYE KKLGPKATLD MFKSMQREDP LATLFLNEYN IVERCDSKAN VDRYIDTFKE LKKGGVKVAG IGLESHFSAP NPAFMRAVLD
201: KLATLKLPIW LTEVDVSSMY GQEEQAVFLE QILREAFSHP SVNGIMLWTA RSPGGCYQTC LTDEKFQNLP TGDVIDQLLL NEWTTGTKRG KTNEFGSYNF
301: RGFLGEFKVS ILYNRTIVNS TFSLGHGVDT KHITIHV

Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)

001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI

Arabidopsis Description

At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.