Factsheet for PGSC0003DMT400012713

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52165	Soybean	cytosol, nucleus	72.75	39.22
KRH61477	Soybean	cytosol	72.5	39.14
AT4G08160.1	Thale cress	cytosol	66.25	35.24
PGSC0003DMT400012716	Potato	mitochondrion	82.75	34.23
PGSC0003DMT400030115	Potato	mitochondrion	76.25	33.12
CDY29140	Canola	cytosol	67.5	31.65
PGSC0003DMT400021703	Potato	mitochondrion	29.5	31.13
KRH15483	Soybean	mitochondrion	72.25	31.08
VIT_18s0001g08370.t01	Wine grape	mitochondrion	73.25	30.94
KRH05535	Soybean	mitochondrion	71.5	30.72
CDY48844	Canola	cytosol	69.25	30.08
CDY53797	Canola	cytosol	69.25	30.08
Bra027867.1-P	Field mustard	cytosol	69.25	30.08
AT1G58370.2	Thale cress	cytosol	69.75	29.52
CDX75175	Canola	cytosol	67.25	28.2
Bra039768.1-P	Field mustard	cytosol	66.75	27.13
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	22.5	26.71
PGSC0003DMT400015813	Potato	cytosol	33.0	26.09
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	27.75	25.58
Os07t0456700-01	Rice	plasma membrane	61.5	22.34
HORVU2Hr1G021350.12	Barley	mitochondrion	61.5	22.3
TraesCS2A01G122200.1	Wheat	mitochondrion	61.0	22.18
EER96324	Sorghum	mitochondrion	60.75	22.13
TraesCS2D01G124900.1	Wheat	mitochondrion	60.75	22.09
Zm00001d019586_P008	Maize	mitochondrion	60.25	21.93
TraesCS2B01G144300.3	Wheat	mitochondrion	61.0	21.59
PGSC0003DMT400037865	Potato	cytosol	29.0	20.42
PGSC0003DMT400024766	Potato	cytosol	25.75	20.16
GSMUA_Achr1P24570_001	Banana	cytosol	56.25	18.99
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	27.75	18.59
PGSC0003DMT400085040	Potato	cytosol	7.75	14.98

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:M1A1N0
PFAM:PF00331	PFAM:PF02018	EnsemblPlantsGene:PGSC0003DMG400004954	PGSC:PGSC0003DMG400004954	EnsemblPlants:PGSC0003DMT400012713	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI000294F90A	:	:	:	:	:

Description

Xylanase Xyn2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004954]

Coordinates

chr4:+:66183604..66186078

Molecular Weight (calculated)

44971.5 Da

IEP (calculated)

5.895

GRAVY (calculated)

-0.232

Length

400 amino acids

Sequence
(BLAST)

001: MGPAQMITEK VELYLTYQVS AWVKIKQASG PQSVNVALGV DSQWVNGGQV EISNDIWHEI GGSFRIEKQA AKVMIYLQGP AAGVDLMVAG LQIFPVDRRA
101: RFRHLKRQTE KIRKQDIILK FSGLDSSNLL GTSVRIRQLQ NSFPFGSAIL RPNMDNEGFN DFFVKNFNWA VFGNELIRYW TEAQQGNFNY KDADELLNFC
201: TQNNIQVRGH CIFWEEVATV QSSVQSLNKS ELMTAVQNRL TGLLTRYKGM FKHYDVINEM MHGSFYLDRL GKDNCVNMFT TAHQLDPSAF LFVNDCHVED
301: GSDSRSSPEK YIEYIHHLQE HGAPVGGIGI HGHIDSPVGP IVCSALDKLS ILGLPIWFTE VDVSSDNEYV RADDLEVILR EAYAHPAVEG KCCGDSGSCY

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.