Factsheet for PGSC0003DMT400012716

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	34.23	82.75
Solyc04g077190.2.1	Tomato	extracellular	96.28	81.38
PGSC0003DMT400030115	Potato	mitochondrion	73.01	76.66
KRH52165	Soybean	cytosol, nucleus	58.12	75.74
KRH61477	Soybean	cytosol	57.7	75.3
VIT_18s0001g08370.t01	Wine grape	mitochondrion	70.84	72.33
KRH15483	Soybean	mitochondrion	68.25	70.97
KRH05535	Soybean	mitochondrion	68.05	70.68
Bra027867.1-P	Field mustard	cytosol	63.7	66.88
CDY48844	Canola	cytosol	63.39	66.56
CDY53797	Canola	cytosol	63.29	66.45
AT1G58370.2	Thale cress	cytosol	64.43	65.93
AT4G08160.1	Thale cress	cytosol	49.22	63.3
CDY29140	Canola	cytosol	48.09	54.51
CDX75175	Canola	cytosol	48.19	48.85
Bra039768.1-P	Field mustard	cytosol	49.12	48.27
HORVU2Hr1G021350.12	Barley	mitochondrion	53.36	46.78
TraesCS2A01G122200.1	Wheat	mitochondrion	52.95	46.55
TraesCS2D01G124900.1	Wheat	mitochondrion	52.84	46.45
EER96324	Sorghum	mitochondrion	52.22	45.99
Os07t0456700-01	Rice	plasma membrane	52.22	45.87
Zm00001d019586_P008	Maize	mitochondrion	51.91	45.68
TraesCS2B01G144300.3	Wheat	mitochondrion	52.74	45.13
GSMUA_Achr1P24570_001	Banana	cytosol	51.71	42.19
PGSC0003DMT400021703	Potato	mitochondrion	14.48	36.94
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	12.31	35.31
PGSC0003DMT400015813	Potato	cytosol	17.27	33.0
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	14.37	32.03
PGSC0003DMT400037865	Potato	cytosol	15.72	26.76
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	16.13	26.13
PGSC0003DMT400085040	Potato	cytosol	5.38	25.12
PGSC0003DMT400024766	Potato	cytosol	12.72	24.07

Protein Annotations

EntrezGene:102601527	Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	InterPro:CenC_carb-bd	InterPro:GH10
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979
UniProt:M1A1N1	PFAM:PF00331	PFAM:PF02018	EnsemblPlantsGene:PGSC0003DMG400004955	PGSC:PGSC0003DMG400004955	EnsemblPlants:PGSC0003DMT400012716
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI000295B756	RefSeq:XP_006356811.1	SEG:seg	:	:	:

Description

Xylanase Xyn2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004955]

Coordinates

chr4:+:66174735..66180134

Molecular Weight (calculated)

107106.0 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.282

Length

967 amino acids

Sequence
(BLAST)

001: MKRLCAFSFA RRLFKPRTTH SQESKEKMEQ SPIVTVEDNF DLQESRERME MSPMITANIN FDSQSATENE KETGSYAATN IIQNHEFSDG LHSWHPNCCD
101: AFVVPASSGY HKGLAAKEGC CYAVVSNRKE CWQGLEQDIT SRVSAGSTYT VSACVGASGT FQGSVEVLAT LKLVYQNSET SYLFIAKKAA SEECWEILEG
201: LFSLSTMPDQ VIFYLEGPPA GTDLLIKSVV ISCPSSTACD SSGTSSVCTD DDNIIINPQF DDGLNSWSGR GCKVALHDSM ADGKITPMSG KSFASATERT
301: QSWNGIQQDV TGRVKRKLAY EVSAVVRIYG NNVTSADLRS TLYVKAADNR ERYIGIASVQ ATDKDWVKLQ GKFLINDSPS QVVVFLEGPP AGTDILINNL
401: VIKHAAKAPP SSPPVIEDAG FGVNIITNTS LNDGTNGWFP LGNCTMSVQT GSPHIMPPMA RDSLGAHEPL SGRYILVANR TQNWMGPAQM ITDKVKLYLT
501: YQVSAWVKIG QTSGPQNVNV ALGVDSQWVN GGQAEISDDR WHEIGGSFRI EKPAAKVMVY IQGPAAGVDL MVAGLQIFPV DRRARFRHLK KQTAKLRKRD
601: VMLKFSGSDS GSLFGTFVRV RQLQNSFPFG SAISRTNMDN EDFNAFFVKN FNWAVFGNEL KWYWTEAQQG NLNYKDADEL LDFCTKNNIQ VRGHCIFWEV
701: VGTVQAWVQS LNKNDLMTAV QNRLTGLLTR YKGKFPHYDV NNEMMHGSFY QDKLGKDIRV NMFKTAHQLD PSPILFVNDY HVEDGCDTRS YPEKYIEHIL
801: DLQEHGAPVG GIGIQGHIDS PVGPIVCSAL DKLGTLGLPI WFTEVDVSSD NEYVRADDLE VMLREAYAHP AVEGIMLWGF WELFMSRSNA HLVDAEGDIN
901: EAGKRYLALK HEWSSHPHGH IDEQGQFSFS GFHGSYEVEV VTVSKKITKK FLVDKGDNAL VISVDIS

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.