Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48844 | Canola | cytosol | 87.83 | 90.12 |
| Bra027867.1-P | Field mustard | cytosol | 87.62 | 89.9 |
| CDY53797 | Canola | cytosol | 87.62 | 89.9 |
| KRH52165 | Soybean | cytosol, nucleus | 56.72 | 72.24 |
| KRH61477 | Soybean | cytosol | 56.51 | 72.06 |
| PGSC0003DMT400012713 | Potato | cytosol, extracellular, nucleus | 29.52 | 69.75 |
| KRH15483 | Soybean | mitochondrion | 66.56 | 67.63 |
| KRH05535 | Soybean | mitochondrion | 66.56 | 67.56 |
| AT4G08160.1 | Thale cress | cytosol | 53.65 | 67.42 |
| VIT_18s0001g08370.t01 | Wine grape | mitochondrion | 67.51 | 67.37 |
| Solyc12g088210.1.1 | Tomato | mitochondrion | 63.07 | 64.71 |
| PGSC0003DMT400012716 | Potato | mitochondrion | 65.93 | 64.43 |
| PGSC0003DMT400030115 | Potato | mitochondrion | 62.54 | 64.17 |
| Solyc04g077190.2.1 | Tomato | extracellular | 65.29 | 53.93 |
| AT1G10050.3 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 59.47 | 51.32 |
| HORVU2Hr1G021350.12 | Barley | mitochondrion | 53.55 | 45.87 |
| TraesCS2A01G122200.1 | Wheat | mitochondrion | 52.8 | 45.36 |
| TraesCS2D01G124900.1 | Wheat | mitochondrion | 52.8 | 45.36 |
| Os07t0456700-01 | Rice | plasma membrane | 52.17 | 44.78 |
| EER96324 | Sorghum | mitochondrion | 51.96 | 44.72 |
| Zm00001d019586_P008 | Maize | mitochondrion | 51.75 | 44.49 |
| TraesCS2B01G144300.3 | Wheat | mitochondrion | 53.02 | 44.34 |
| GSMUA_Achr1P24570_001 | Banana | cytosol | 53.02 | 42.28 |
| AT4G38300.1 | Thale cress | mitochondrion | 11.85 | 40.43 |
| AT4G38650.1 | Thale cress | vacuole | 18.1 | 30.43 |
| AT4G33830.1 | Thale cress | vacuole | 16.4 | 26.91 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 15.98 | 26.22 |
| AT4G33840.1 | Thale cress | vacuole | 15.98 | 26.22 |
| AT4G33810.3 | Thale cress | extracellular, vacuole | 14.5 | 24.08 |
| AT4G33820.1 | Thale cress | extracellular, vacuole | 14.39 | 23.86 |
| AT2G14690.1 | Thale cress | vacuole | 13.33 | 22.11 |
Protein Annotations
| Gene3D:2.60.120.260 | MapMan:21.2.2.2.4 | Gene3D:3.20.20.80 | EntrezGene:842206 | UniProt:A0A1P8AWH8 | ProteinID:ANM61018.1 |
| ArrayExpress:AT1G58370 | EnsemblPlantsGene:AT1G58370 | RefSeq:AT1G58370 | TAIR:AT1G58370 | RefSeq:AT1G58370-TAIR-G | EnsemblPlants:AT1G58370.2 |
| Unigene:At.440 | InterPro:CenC_carb-bd | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | RefSeq:NP_001323263.1 | PFAM:PF00331 | PFAM:PF02018 |
| PRINTS:PR00134 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF15 | Symbol:RXF12 | SMART:SM00633 |
| SUPFAM:SSF49785 | SUPFAM:SSF51445 | UniParc:UPI000848C3EB | SEG:seg | : | : |
Description
RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
Coordinates
chr1:+:21684263..21688359
Molecular Weight (calculated)
105773.0 Da
IEP (calculated)
6.480
GRAVY (calculated)
-0.371
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.